PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g06820 | ||||||||
Common Name | GSCOC_T00007412001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 545aa MW: 60850.3 Da PI: 6.0339 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 454.1 | 8.7e-139 | 174 | 544 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++ L++cA+av+++d+ q+l+++l++++s +g+p+qRl ay++e+L a+la s+s++yk+l+++e + s e l+++++++ev+P++kf+++ a Cc00_g06820 174 LKQILIACAKAVADNDTLISQWLMSELRQMVSVSGEPIQRLGAYMLEGLVAKLAASGSSIYKSLRCKEPA---SFELLSYMHILYEVCPYFKFGYMSA 268 5789*****************************************************************9...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N aI ea++ e+rvHiiDf+isqG QW++L+qa+a+Rp+gpp++RiTg+++++s + l+ +g+rL+++Ae+++vpfef++ +a + ++++e+L Cc00_g06820 269 NGAIAEAMKDENRVHIIDFQISQGSQWVTLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLSIVGQRLSRLAESFKVPFEFHA-AAMSGCEVQPEDL 365 ***************************************************998899999************************.89999******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++pgEalaVn+++ lh+++desvs+e++rd++L+lvksl+Pkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr+++eri+vE+++l+r Cc00_g06820 366 GIQPGEALAVNFAFVLHHMPDESVSTENPRDRLLRLVKSLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPRDHKERINVEQHCLAR 463 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++vnv+aceg er+erhe l+kW++r+++aGF+p+pl + +++++k ll++++++ yr+ee++g+l+lgW++r Lv+ +aW+ Cc00_g06820 464 DVVNVIACEGPERVERHEVLGKWKSRFRMAGFSPYPLCSLVNATIKKLLENYSDK-YRLEERDGALYLGWMNRDLVASCAWK 544 *****************************************************55.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.271 | 148 | 525 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-136 | 174 | 544 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MQASQRPRKV GMPNTFFLNQ PLQKVESYFL PHIQTFEPQL SCNNSRYGPS CPIQISHDRY 60 CTLESSSLTG NHTIYNSPST VSFSPIGSPV SQQESLHMTD PVQSPETNYG SPLSGSCITN 120 DVNDLRHKLR ELENAMLGPD SDFFGACDNL LPINEGALEN SWRQMIEVIP RGDLKQILIA 180 CAKAVADNDT LISQWLMSEL RQMVSVSGEP IQRLGAYMLE GLVAKLAASG SSIYKSLRCK 240 EPASFELLSY MHILYEVCPY FKFGYMSANG AIAEAMKDEN RVHIIDFQIS QGSQWVTLIQ 300 AFAARPGGPP HIRITGIDDS TSAYARGGGL SIVGQRLSRL AESFKVPFEF HAAAMSGCEV 360 QPEDLGIQPG EALAVNFAFV LHHMPDESVS TENPRDRLLR LVKSLNPKVV TLVEQESNTN 420 TAAFFPRFLE TLDYYTAMFE SIDVTLPRDH KERINVEQHC LARDVVNVIA CEGPERVERH 480 EVLGKWKSRF RMAGFSPYPL CSLVNATIKK LLENYSDKYR LEERDGALYL GWMNRDLVAS 540 CAWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-62 | 176 | 544 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027061587.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027061588.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027061589.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027061590.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027064389.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027064390.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027064391.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027064392.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027170795.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027170796.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027170797.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_027170798.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A068VEA1 | 0.0 | A0A068VEA1_COFCA; Uncharacterized protein | ||||
STRING | VIT_12s0057g00560.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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