PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g04010 | ||||||||
Common Name | GSCOC_T00013726001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | HB-other | ||||||||
Protein Properties | Length: 94aa MW: 11064.1 Da PI: 9.6351 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.5 | 7.3e-06 | 33 | 58 | 19 | 43 |
HHH.SSS--HHHHHHHHHHCTS-HHH CS Homeobox 19 Fek.nrypsaeereeLAkklgLterq 43 F k +++p++++r++L+++lgL+ rq Cc00_g04010 33 FLKeCPHPDENQRRQLSSELGLEPRQ 58 5555*******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-5 | 34 | 58 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MKLSKVLVYI LHARSFLNLC VFTLFYLFYF FMFLKECPHP DENQRRQLSS ELGLEPRQSS 60 SGFKIKEPKQ RVTMNELTTM PLELKITDSI MRL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A068VC68 | 2e-61 | A0A068VC68_COFCA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 9e-09 | homeodomain GLABROUS 11 |