PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g03570

Common Name

GSCOC_T00003688001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bZIP

Protein Properties

Length: 434aa MW: 47024.1 Da PI: 6.4642

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g03570	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.6e-10	232	290	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l++e+ Cc00_g03570 232 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 290 9*********************************************9998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.8E-16	228	292	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.932	230	293	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-10	232	286	No hit	No description
Pfam	PF00170	1.1E-8	232	286	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-10	232	283	No hit	No description
CDD	cd14703	2.86E-25	233	282	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MDRDKSVNHG GGLPPSGRYS SFSPPGSSYG VKPEQSGSST LPPIGPGGIS ESTHFGHGMS 60 SDSSRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDISFD SDLGVVGGLD GPSFSDDTEE 120 DLLSMYLDMD KFNSSSATSA FQVGESSSLA AGVLGSSSTA ASASTSLAPP SEIVSGISDK 180 PRVRHQHSQS MDGSTTIKPE MLTSGAEEPS QADAKKAMSA TKLAELALID PKRAKRIWAN 240 RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLTAEN SELKLRLQTM 300 EQQVHLQDAL NDALKEEIQH LKVLTGQIPN GGPMMNYPPS FGANQQYYSS NHAMHTLLTA 360 QQFQQLQINS QKQQHQFQPH QMHQFQQHQL PQSLIQQQDH PMQQTGDLKL RGSLPTPAQT 420 DNASDTSASL SKD*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MDRDKSVNHG GGLPPSGRYS SFSPPGSSYG VKPEQSGSST LPPIGPGGIS ESTHFGHGMS  60
SDSSRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDISFD SDLGVVGGLD GPSFSDDTEE  120
DLLSMYLDMD KFNSSSATSA FQVGESSSLA AGVLGSSSTA ASASTSLAPP SEIVSGISDK  180
PRVRHQHSQS MDGSTTIKPE MLTSGAEEPS QADAKKAMSA TKLAELALID PKRAKRIWAN  240
RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLTAEN SELKLRLQTM  300
EQQVHLQDAL NDALKEEIQH LKVLTGQIPN GGPMMNYPPS FGANQQYYSS NHAMHTLLTA  360
QQFQQLQINS QKQQHQFQPH QMHQFQQHQL PQSLIQQQDH PMQQTGDLKL RGSLPTPAQT  420
DNASDTSASL SKD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027117495.1	0.0	probable transcription factor PosF21
Refseq	XP_027117496.1	0.0	probable transcription factor PosF21
Refseq	XP_027117497.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-153	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A068VB62	0.0	A0A068VB62_COFCA; Uncharacterized protein
STRING	EMJ23579	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3965	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-137	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]