PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g03490
Common NameGSCOC_T00003115001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 95aa    MW: 11106.9 Da    PI: 9.7199
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g03490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.86.3e-122692169
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69
                 kfYn+YA ++ Fsvrk++ +k  ++g it+r++ C k+  +++ +++    +rtra t+tg + k+ + 
  Cc00_g03490 26 KFYNKYAFKMSFSVRKDYLNKD-KDGVITSRRYSCCKKCVKRKYEDD-AMPKRTRAPTKTGYETKMIIA 92
                 6*****************9998.8999********999999888887.799999*******99999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-92692IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MDCSKLTEDK IPELGMEFNS KEDAYKFYNK YAFKMSFSVR KDYLNKDKDG VITSRRYSCC  60
KKCVKRKYED DAMPKRTRAP TKTGYETKMI IANL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122186.15e-60protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A068VBU45e-62A0A068VBU4_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.18e-10FAR1-related sequence 12