PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g02380

Common Name

GSCOC_T00012213001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bZIP

Protein Properties

Length: 335aa MW: 37082.6 Da PI: 9.2433

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g02380	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47	5.6e-15	264	307	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lk + Cc00_g02380 264 RRQKRMIKNRESAARSRARKQAYTHELENKVTRLEEENERLKRQ 307 79************************************999954 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.7E-14	259	309	No hit	No description
SMART	SM00338	4.3E-14	260	328	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.576	262	307	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-12	264	307	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.69E-11	264	311	No hit	No description
CDD	cd14707	1.51E-25	264	313	No hit	No description
PROSITE pattern	PS00036	0	267	282	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MGSQGGVGKS TVGGTQIHEP KSSSLARQGS LYSLTLDEVQ HHLGDLGKPL SSMNLDELLK 60 TVWTAEANQG TGGVDYGVHQ HGQLPLALNR QSSLTLSRDL SKKTVDEVWQ DIQQGQEHNH 120 ERKAQERQIT LGEITLEDFL VKAGVVAEPT PSKNSGSSLG VDAVVLPQQN VPPQSQWTQY 180 QIPSIHQSPP PQQQQQQNIM PVFMPGHPVQ PQLTIGSNPM MDSAYPETQM TMSPSTLMGT 240 LSDTQTPGRR RVGSGDVIEK TVERRQKRMI KNRESAARSR ARKQAYTHEL ENKVTRLEEE 300 NERLKRQREM EKALTTVPPP EPKYQLRRTS SGPV*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065177.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_027065178.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_027065179.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_027065181.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-102	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A068VAQ2	0.0	A0A068VAQ2_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400072260	1e-150	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3334	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	6e-99	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]