PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g01440

Common Name

GSCOC_T00010646001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 336aa MW: 38454.3 Da PI: 10.2042

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g01440	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.4	2.4e-23	63	150	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAkevGF +++s+ +k ng+ ++r f+Cs +gkr ++k++ + r +r+etr +C ak+kv+ +++gk+++ +l eHnH l+ Cc00_g01440 63 NFYLAYAKEVGFGIKRSSFHKD-SNGKLMDRVFCCSAKGKRGKDKRD-LNVRAPRPETRFNCSAKMKVNSRQTGKFRICQLIIEHNHYLS 150 6**************98887.8888*************999.999**********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-19	63	150	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
METEVSSYRR LDFDKVDQIT NDEVSTPPVL NVIKDINKIH TLIPFELIPK MGMEFESEED 60 AYNFYLAYAK EVGFGIKRSS FHKDSNGKLM DRVFCCSAKG KRGKDKRDLN VRAPRPETRF 120 NCSAKMKVNS RQTGKFRICQ LIIEHNHYLS SPNKSHLHIS HRKINSIHAA EIDMAYRDHI 180 SLAFTKRYRD LCRLYTQLVT KAAQAEETYK IAKEGLLKIL DLVDARLHQE GSSNEMSNAA 240 KVSNPTNNTT NASGINIKGI KKKMKTISGK RLKSSLEKAT KRRRSTKKSF QNSITMELPA 300 SSHNEVLSHY NFTIFVIQYF LILCIQSLFF LFISL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	282	288	RRSTKKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027067800.1	1e-119	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027103035.1	1e-123	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A068V959	0.0	A0A068V959_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15234	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-18	FAR1-related sequence 5