PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033711m
Common NameCICLE_v10033711mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 275aa    MW: 31388.1 Da    PI: 5.0366
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033711mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.21.1e-0749122380
             FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                      Y++ +k +GF++ k++s+k  +++e +  t  Cs +gk+++  ++     r +++t+t+Ck k++ +   d kwev++
  Ciclev10033711m  49 YKKNGKFMGFEIIKRTSSKG-DDEELKYVTSSCSPSGKPKSLLNH---PFRLQPTTKTNCKVKVRATTCLDRKWEVMS 122
                      8899999********99998.8888**************998777...8999***********************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MILISWIFLL YLNQVDDKND TSNDPKVEEI IKPKIGMVCY TNLDLFESYK KNGKFMGFEI  60
IKRTSSKGDD EELKYVTSSC SPSGKPKSLL NHPFRLQPTT KTNCKVKVRA TTCLDRKWEV  120
MSRYGKITCQ PANLPKSTCK TPSTVGNFVG YNGFGISNLN SLRVVSEFGI EKKYVKYQPQ  180
SSRQKALHRL VVFSAAATTR RHQLFLFSLN FTNTATTHDH EELEEGEYEE DEVELDEDEE  240
EENGSVHDDG EGEREADTEN YESENDLQHR ELQV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLV4VDA20.0V4VDA2_9ROSI; Uncharacterized protein
STRINGXP_006437124.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17343310