PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033673m
Common NameCICLE_v10033673mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 360aa    MW: 40315.9 Da    PI: 9.6562
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033673mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.91.1e-1271127155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a++k++g
  Ciclev10033673m  71 SKYRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 127
                      89*******************88887786625555.********************98 PP
2AP250.36e-16170221155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ + rW+A+I   +   g +k+ +lg++gt eeAa a++ a+ + +g
  Ciclev10033673m 170 SKYRGVARHHHNRRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEHRG 221
                      89****99**9*******99966...3.6**********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1571137IPR016177DNA-binding domain
PfamPF008475.8E-971127IPR001471AP2/ERF domain
CDDcd000181.00E-1771137No hitNo description
Gene3DG3DSA:3.30.730.101.1E-1272136IPR001471AP2/ERF domain
PROSITE profilePS5103218.472135IPR001471AP2/ERF domain
SMARTSM003806.9E-1972141IPR001471AP2/ERF domain
PRINTSPR003672.4E-57384IPR001471AP2/ERF domain
CDDcd000181.42E-21170231No hitNo description
PfamPF008472.5E-11170219IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-16170231IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-16171229IPR001471AP2/ERF domain
PROSITE profilePS5103217.029171229IPR001471AP2/ERF domain
SMARTSM003803.3E-22171235IPR001471AP2/ERF domain
PRINTSPR003672.4E-5211231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MENGAVKSGG RGGDMEAVLV PACIINKRRR RERDPSLGIG FNNVNQQVEQ QADEAAAATT  60
AAAATTVKRS SKYRGVSRHR WTGRYEAHLW DKGSWNPTQR KKGKQGAYDE EESAARAYDL  120
AALKYWGTST FTNFPVSEYE KEIEIMKTVT REEYLATLRR RSSGFSRGVS KYRGVARHHH  180
NRRWEARIGR VFGNKYLYLG TYGTQEEAAH AYDIAAIEHR GINAVTNFDI STYIRWLKPA  240
AGGNSHNPAF QEPKPILEYS PPTSSLLSNH ILTEGHQITD ISIFNDSNPF PLQDQDIPKK  300
QDSFQANIKS SLPFSPCTKS SSSSPTALSL LLRSSVFKEL VEKNPNNSAE VNIEENDTKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104PTQRKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042593.10.0AP2-like ethylene-responsive transcription factor AIL5 isoform X2
TrEMBLV4SVF00.0V4SVF0_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006438623.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-76AP2 family protein