PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033605m
Common NameCICLE_v10033605mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 518aa    MW: 56319.7 Da    PI: 4.6982
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033605mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like25.62.8e-081011252650
          G2-like  26 kAtPktilelmkvkgLtlehvkSHL 50 
                      kA+Pk+il+lm+v+gLt+e+vk  L
  Ciclev10033605m 101 KAVPKKILDLMNVEGLTRENVKFRL 125
                      8********************9766 PP
2Response_reg43.32e-152691165
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH CS
     Response_reg  1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei 65
                     vl vdD+++ +++l+++l++ +y ev+++  +  al++l+e++  +Dl++ D+ mp+mdG++ll+  
  Ciclev10033605m 26 VLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRENRnnFDLVISDVYMPDMDGFKLLELV 91
                     799********************.***************999889******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.54E-1923100IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.2E-2123100No hitNo description
SMARTSM004481.4E-624125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.72925182IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-122692IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.37E-1327100No hitNo description
Gene3DG3DSA:1.10.10.605.6E-6101125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MTAEEKGGSS SDEDGVIDKF PIGMRVLAVD DDQTCLKILE KFLRECQYEV TVTNRAITAL  60
KMLRENRNNF DLVISDVYMP DMDGFKLLEL VGLEMDLPVV KAVPKKILDL MNVEGLTREN  120
VKFRLSLKRL GNKTLEAGMV ASVGSKDSSY LRIGALDGFG GSHSVNSPGR LSSSALSSSY  180
VPGSMIGRLN SSAGLSMHGI ASSGMIKPGL SQSFNTSFNT IGKNQQAMFP ANRNSNLVQG  240
VQTSLEPNQM PQSESTTHIG DFNHINSPTA FTAATGFIDA RVAVGSSSSS VSTSLSNLMM  300
LQANPHQAQS RDAYGNQSSL TVASLNQAYF DVGVHDSSNF LDHGRCQESW QDAVQLSKSS  360
SISLPLGEPF ILDQVPPNNL DNILSSNCYL DISSSIANST YLENSRGDLS YQPGMIGNEI  420
QNYASKQWME HKQDYNQNID HPVSNVNSLL CSNYTMGPFS SSMNQSNSPY VAQHTGVEKA  480
SLDTNLRSND DFLLEQSACH DGFMQNNYDP IYDECND*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486037.10.0two-component response regulator ARR10-like isoform X2
TrEMBLV4VAP00.0V4VAP0_9ROSI; Uncharacterized protein
STRINGXP_006436079.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.16e-40response regulator 12