PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033380m
Common NameCICLE_v10033380mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 384aa    MW: 42083.2 Da    PI: 6.9405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033380mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00093148170123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Ciclev10033380m 148 YECKTCNRTFPSFQALGGHRASH 170
                      99**********99999998887 PP
2zf-C2H212.90.00033255277123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Ciclev10033380m 255 HECSICGAEFTSGQALGGHMRRH 277
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-8147170No hitNo description
PfamPF139123.7E-13147172IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.637148175IPR007087Zinc finger, C2H2
SMARTSM003550.052148170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-8250277No hitNo description
PfamPF139126.9E-13254279IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723255277IPR007087Zinc finger, C2H2
SMARTSM003550.01255277IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEEAQEEVLM INSSNKDQQS HNNNIVKGKR TKRQRPQSPV PFVVNGTIHD NTNLSSSPAV  60
SSAEEFFDST EEDEDMANCL ILLAQCQSTR ESPPKPKPAH YDVHEQEEIA QLQINNNVNN  120
SGMKFNSRRF LEAPGTGTGT GKGGCYVYEC KTCNRTFPSF QALGGHRASH KKPKAMLMND  180
DRLSLKSQHQ QQQQQQFLVS KSDDEEEDGN FRNVSSLSLQ LSNNNRGHNN NNNNSSFYSG  240
NINNGVVKGN SSKVHECSIC GAEFTSGQAL GGHMRRHRSA PVAATAAAMA TTNTTLSLTP  300
MAVVEAGQDQ PRKSSSSSSS SRNNLLSLDL DLNLPAPEDD PKESKLPFSS KQQQQQQQQQ  360
QPQQQQKSSL VFTAAAALVD CHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436528.10.0zinc finger protein ZAT5
RefseqXP_006485347.10.0zinc finger protein ZAT5-like
TrEMBLA0A2H5PQ590.0A0A2H5PQ59_CITUN; Uncharacterized protein
TrEMBLV4SPQ10.0V4SPQ1_9ROSI; Uncharacterized protein
STRINGXP_006485347.10.0(Citrus sinensis)
STRINGXP_006436528.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-40C2H2 family protein