PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033354m
Common NameCICLE_v10033354mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 228aa    MW: 25169 Da    PI: 4.796
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033354mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.9e-3971071100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrr+C++dC++apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar++dP+yG+v++i++lqqq+++l++e
  Ciclev10033354m   7 SCGACKFLRRRCTNDCIFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRSDAAITISYEALARMHDPIYGCVAHIFALQQQVANLQEE 100
                      6************************978****************************************************************** PP

           DUF260  94 lallkee 100
                      +++l+++
  Ciclev10033354m 101 IEMLENH 107
                      *998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5176108IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRRCTN DCIFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN  60
RSDAAITISY EALARMHDPI YGCVAHIFAL QQQVANLQEE IEMLENHMAN NLVGAVFSGG  120
SQTPNEPCSQ SYFSPQLEAM NTLYYPNQQA ELLQNHAANI NINQAFESQT NAEIHCLQGW  180
EDQNFLTESN PNHLLGNLDA VEQENFANYP SFDINGNAIN LQGPSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3431237124LOB family transfactor Ramosa2.1
5ly0_B2e-3431237124LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316271.24e-92LOB domain-containing protein 29
TrEMBLA0A2H5Q3621e-168A0A2H5Q362_CITUN; Uncharacterized protein
TrEMBLV4TGP21e-168V4TGP2_9ROSI; Uncharacterized protein
STRINGXP_006435636.11e-169(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-46LOB domain-containing protein 33