PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032922m
Common NameCICLE_v10032922mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 169aa    MW: 18340.6 Da    PI: 8.1555
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032922mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00144567123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  Ciclev10032922m 45 FECKTCNRQFPSFQALGGHRASH 67
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.33E-943114No hitNo description
PfamPF139129.2E-134469IPR007087Zinc finger, C2H2
SMARTSM003550.164567IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.914572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139124.5E-1091116IPR007087Zinc finger, C2H2
SMARTSM003550.5892114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6692125IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKRTFQEPTE LNHSLNMANC LMFMPHGGDF DAVNGVNMAV ADRAFECKTC NRQFPSFQAL  60
GGHRASHKKS RVTEGSGGGA DTQQSPVKPK THECSVCGLE FAIGQALGGH MRRHRAGASH  120
ANEKLSAFSS LSDTAPLVEK ANSRRVLCLD LNLTPYENDL EFYRLGSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436057.11e-124zinc finger protein ZAT11
RefseqXP_006486056.11e-124zinc finger protein ZAT11-like
TrEMBLA0A2H5NYS01e-123A0A2H5NYS0_CITUN; Uncharacterized protein
TrEMBLV4T7V51e-123V4T7V5_9ROSI; Uncharacterized protein
STRINGXP_006486056.11e-123(Citrus sinensis)
STRINGXP_006436057.11e-123(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-40C2H2 family protein