PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10032644m | ||||||||
Common Name | CICLE_v10032646mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 232aa MW: 24971 Da PI: 4.84 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.3 | 3.6e-56 | 39 | 143 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdf Ciclev10032644m 39 QLQMFWSYQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDF 132 89*****998899********************************************************************************* PP NF-YC 92 lvdivprdelk 102 lvdivprde+k Ciclev10032644m 133 LVDIVPRDEIK 143 ********975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.53E-33 | 27 | 133 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.8E-37 | 53 | 125 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-20 | 61 | 124 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MENNQQGQSS SYPPQPPSAA AAATATAPFH HLIQQQQQQL QMFWSYQRQE IEQANDFKNH 60 QLPLARIKKI MKADEDVRMI SAEAPILFAK ACELFILELT IRSWLHAEEN KRRTLQKNDI 120 AAAITRTDIF DFLVDIVPRD EIKDEAAGLG GMVGATASGV PYYYPPMGQP TGTAGPGGMM 180 IGRPAVDPTG VYVQPPSQAW QSVWQTPAGT GDDGSYGSGG SGGPANLDGQ G* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-55 | 47 | 139 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 111 | 117 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ccl.19637 | 0.0 | fruit| vegetative tissue |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436849.1 | 1e-171 | nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_006493208.1 | 1e-171 | nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_024042168.1 | 1e-171 | nuclear transcription factor Y subunit C-1 | ||||
Swissprot | Q9SMP0 | 1e-117 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A067E8S6 | 1e-170 | A0A067E8S6_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TJW4 | 1e-170 | V4TJW4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006493208.1 | 1e-171 | (Citrus sinensis) | ||||
STRING | XP_006436849.1 | 1e-171 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-112 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10032644m |
Entrez Gene | 18045389 |
Publications ? help Back to Top | |||
---|---|---|---|
|