PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10032332m

Common Name

CICLE_v10032332mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 283aa MW: 30929.7 Da PI: 9.4502

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10032332m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.2	3.7e-24	26	73	2	49
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 +k++s++d+skyFslp+ dAA++Lgvc++vLK+iCR +G++RWP+Rk Ciclev10032332m 26 TKSLSFDDISKYFSLPLSDAANHLGVCVSVLKKICRDNGLDRWPYRKF 73 799********************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.597	9	95	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-21	29	73	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MMSSLSLHNN SSISKAAASS SISTSTKSLS FDDISKYFSL PLSDAANHLG VCVSVLKKIC 60 RDNGLDRWPY RKFLSGKSIE DIKKYAAREK SKELAELSKI ARKSGFQPLN NETSKLHGVA 120 SPPNLQQQGS KSSPVGQPHV LLNANLTKGI MALDEFKHGF PSDGLSTASY KWWGSRSSDG 180 NDGIHKDESE IDEEDKQAEA KADKESATQA TGNEKSGNGE TESNVDPQGS GLLTAVRKRT 240 VEEGQEALKL GVYKKYCVKQ LDRKERVLLH RIFKSSLPKE WP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX064679	0.0	KX064679.1 Citrus trifoliata clone 2 RWP-RK domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437156.1	0.0	protein NLP3
Refseq	XP_006484885.1	0.0	protein NLP3
TrEMBL	A0A2H5PI01	0.0	A0A2H5PI01_CITUN; Uncharacterized protein
TrEMBL	V4TKR6	0.0	V4TKR6_9ROSI; Uncharacterized protein
STRING	XP_006484885.1	0.0	(Citrus sinensis)
STRING	XP_006437156.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11651	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	8e-11	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Ciclev10032332m
Entrez Gene	18043892