PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10032317m | ||||||||
Common Name | CICLE_v10032317mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 286aa MW: 31388.9 Da PI: 6.5167 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.3 | 1.8e-18 | 27 | 72 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W+ I++ ++ gR++k+c++rw + Ciclev10032317m 27 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQ 72 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.2e-17 | 81 | 123 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a++ +G++ W+tIar ++ gRt++ +k++w++ Ciclev10032317m 81 PFTPAEDSIIIQAHAVHGNK-WATIARSLP-GRTDNAIKNHWNST 123 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.884 | 22 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-30 | 24 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-16 | 26 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-17 | 27 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-25 | 28 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-14 | 29 | 71 | No hit | No description |
PROSITE profile | PS51294 | 21.598 | 78 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 81 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 81 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.52E-12 | 81 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MMISTTSSSS MNNNSTNSNS NNNDRIKGSW SPQEDATLIK LVEQHGPRNW SMISSGIPGR 60 SGKSCRLRWC NQLSPTVQHR PFTPAEDSII IQAHAVHGNK WATIARSLPG RTDNAIKNHW 120 NSTLRRKRMA ELSSASSESN SVMMKRPGFE NNISSAESDS DSGGIKRQCL RVSQEHDSYN 180 VEAGIVGPET LLTLSPPGES VVLGGSGGEK VEDEEKLKIN KECDGDGDGG KIEKEKGEDR 240 CTVDMEMEES CLFTIMRRMI AEEVRNQFDG LRAQAGLRFS VQKDT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-38 | 26 | 127 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 7e-38 | 22 | 127 | 53 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-38 | 22 | 127 | 53 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-38 | 26 | 127 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-38 | 26 | 127 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435772.1 | 0.0 | transcription factor MYB73 | ||||
Refseq | XP_006486296.1 | 0.0 | transcription factor MYB73-like | ||||
TrEMBL | A0A2H5NLC4 | 0.0 | A0A2H5NLC4_CITUN; Uncharacterized protein | ||||
TrEMBL | V4T705 | 0.0 | V4T705_9ROSI; Uncharacterized protein | ||||
STRING | XP_006486296.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006435772.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 5e-53 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10032317m |
Entrez Gene | 18045472 |