PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032317m
Common NameCICLE_v10032317mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 286aa    MW: 31388.9 Da    PI: 6.5167
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032317mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-182772147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l+++v+q+G+++W+ I++ ++ gR++k+c++rw + 
  Ciclev10032317m 27 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQ 72
                     799*****************************.***********985 PP

2Myb_DNA-binding54.23.2e-1781123347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed ++++a++ +G++ W+tIar ++ gRt++ +k++w++ 
  Ciclev10032317m  81 PFTPAEDSIIIQAHAVHGNK-WATIARSLP-GRTDNAIKNHWNST 123
                      89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8842277IPR017930Myb domain
SuperFamilySSF466891.8E-3024120IPR009057Homeodomain-like
SMARTSM007175.3E-162675IPR001005SANT/Myb domain
PfamPF002491.3E-172772IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-252880IPR009057Homeodomain-like
CDDcd001671.59E-142971No hitNo description
PROSITE profilePS5129421.59878128IPR017930Myb domain
SMARTSM007171.5E-1478126IPR001005SANT/Myb domain
PfamPF002491.8E-1481123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2381127IPR009057Homeodomain-like
CDDcd001679.52E-1281124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MMISTTSSSS MNNNSTNSNS NNNDRIKGSW SPQEDATLIK LVEQHGPRNW SMISSGIPGR  60
SGKSCRLRWC NQLSPTVQHR PFTPAEDSII IQAHAVHGNK WATIARSLPG RTDNAIKNHW  120
NSTLRRKRMA ELSSASSESN SVMMKRPGFE NNISSAESDS DSGGIKRQCL RVSQEHDSYN  180
VEAGIVGPET LLTLSPPGES VVLGGSGGEK VEDEEKLKIN KECDGDGDGG KIEKEKGEDR  240
CTVDMEMEES CLFTIMRRMI AEEVRNQFDG LRAQAGLRFS VQKDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-38261273104MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-382212753158MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-382212753158MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-38261273104C-Myb DNA-Binding Domain
1msf_C4e-38261273104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435772.10.0transcription factor MYB73
RefseqXP_006486296.10.0transcription factor MYB73-like
TrEMBLA0A2H5NLC40.0A0A2H5NLC4_CITUN; Uncharacterized protein
TrEMBLV4T7050.0V4T705_9ROSI; Uncharacterized protein
STRINGXP_006486296.10.0(Citrus sinensis)
STRINGXP_006435772.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.15e-53myb domain protein 70