PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032258m
Common NameCICLE_v10032259mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 298aa    MW: 31651 Da    PI: 7.8901
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032258mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-101155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+e d+ + +a   ++ +   +W++Ia+ ++ g++l+++k ++ 
  Ciclev10032258m 11 VWTKEQDKAFENALVSYPEDasdRWEKIAADVP-GKSLEEIKQHYE 55
                     7********************************.**********95 PP
2Myb_DNA-binding422.2e-13123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Ciclev10032258m 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 167
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.903762IPR017884SANT domain
SMARTSM007176.6E-9860IPR001005SANT/Myb domain
SuperFamilySSF466891.38E-111066IPR009057Homeodomain-like
PfamPF002496.9E-81155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-41158IPR009057Homeodomain-like
CDDcd001675.28E-91258No hitNo description
PROSITE profilePS5129417.581115172IPR017930Myb domain
SuperFamilySSF466891.27E-16118173IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17120170IPR006447Myb domain, plants
SMARTSM007173.2E-10120170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10123166IPR009057Homeodomain-like
CDDcd001678.54E-10123168No hitNo description
PfamPF002492.7E-11123167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTVDEVGSSS VWTKEQDKAF ENALVSYPED ASDRWEKIAA DVPGKSLEEI KQHYELLVDD  60
VNRIESGCVP LPSYNSSSDG SMSHAGDEGT SNGKKGGHYG HFNSESNGNK SSRSDQERRK  120
GIAWTEDEHR LFLLGLDKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR  180
SSIHDITSVN NGDISAPQGP ITGQTNGSGG GGSSGKSSKQ PPQHSAGPPG VGMYGAPTMG  240
QPIGGPLVSA VGTPVNLPAP AHMAYGVRAT VPGTVVPGAP MNVSPMPYPM PHASAHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-18777676RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437648.10.0transcription factor SRM1
RefseqXP_006437649.10.0transcription factor SRM1
RefseqXP_006484484.10.0transcription factor SRM1
RefseqXP_015387550.10.0transcription factor SRM1
RefseqXP_015387551.10.0transcription factor SRM1
RefseqXP_024041573.10.0transcription factor SRM1
RefseqXP_024041574.10.0transcription factor SRM1
RefseqXP_024041575.10.0transcription factor SRM1
RefseqXP_024041576.10.0transcription factor SRM1
RefseqXP_024956475.10.0transcription factor SRM1
SwissprotQ9FNN61e-134SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2H5P3L90.0A0A2H5P3L9_CITUN; Uncharacterized protein
TrEMBLV4VEK00.0V4VEK0_9ROSI; Uncharacterized protein
STRINGXP_006484484.10.0(Citrus sinensis)
STRINGXP_006437648.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-133MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]