PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032206m
Common NameCICLE_v10032207mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 308aa    MW: 33395.1 Da    PI: 9.596
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032206mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.73.3e-32149205158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k+rkpylheSRh+hA+rR+Rg+gGrF
  Ciclev10032206m 149 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKPYLHESRHQHAMRRARGCGGRF 205
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.5E-37147208IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.864148208IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-27150205IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-23151173IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860153173IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-23182205IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMPAKPDENR QLDRGAQSVS QSAIYSQQPW WSGTGTGASL AEAAASKSSR EQPNGSVVNG  60
ATYSQDGING QEHAHLKHIP SSTPLTMGER LEQNSQMELV GHSIVLTSYP YTDPQHVGVI  120
TPYVPQVMIP PQLYGMHQAR MPLPLEMEEE PVYVNAKQYR GILRRRQSRA KAELEKKVIK  180
ARKPYLHESR HQHAMRRARG CGGRFLNTKQ LNDNAANSAE KGMNSGADGS KGSTNGTGSV  240
DSSIVQQERA MEENAHMEHT SSNSNSNNRS LLSMYNTSSG SVEGNFLGQQ TGSLQGNGAP  300
RGALPVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-20149212265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.103180.0abscission zone
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439109.10.0nuclear transcription factor Y subunit A-4
RefseqXP_006482871.10.0nuclear transcription factor Y subunit A-4-like
TrEMBLV4TL290.0V4TL29_9ROSI; Uncharacterized protein
STRINGXP_006482871.10.0(Citrus sinensis)
STRINGXP_006439109.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160191014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-34nuclear factor Y, subunit A1