PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032127m
Common NameCICLE_v10032127mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 323aa    MW: 36074 Da    PI: 9.3904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032127mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.8e-09262309247
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      g W++ Ed  l++a k ++++   +W++Ia+ ++ gR+   c  r+ ++
  Ciclev10032127m 262 GVWSAGEDIALLNALKAFPKDvplRWEKIAAAVP-GRSKAACMKRFSDL 309
                      78********************************.**********9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.053160201IPR017877Myb-like domain
SMARTSM007177.0E-4164217IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-5166205IPR009057Homeodomain-like
SMARTSM007171.7E-8260312IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-11261310IPR009057Homeodomain-like
PROSITE profilePS500907.399262310IPR017877Myb-like domain
PfamPF002496.8E-8262309IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-7262309IPR009057Homeodomain-like
CDDcd001671.14E-6264306No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEFLDEDARP RFLFQSRPQP SSSSLDGSNH NNNIHQKPTK LSVFITLTIS SFFIFVAFFF  60
FQSSEPFQSL LLWLSLSLFI GPFAPSHLTG GHTRVGHGPI VETPPIPDPN IEKKLQKPQK  120
NRSLANKSPD FIPGSVPIVE NSNGSIGNES KGEKVEVLQR KSEEEKEWNE EDIEILKKQM  180
VKNPVGKPKR WEVIAEAFNG RHRVESVIKK AKELGEKKID DSDSYNQFLK NRKAIDMRVV  240
QENCEDSKKE SQENVVVGGG GGVWSAGEDI ALLNALKAFP KDVPLRWEKI AAAVPGRSKA  300
ACMKRFSDLK RDFRSSKAGD EA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436809.10.0transcription factor MAMYB
RefseqXP_006485375.10.0transcription factor MAMYB
SwissprotQ9ASQ23e-78MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A2H5PCB10.0A0A2H5PCB1_CITUN; Uncharacterized protein
TrEMBLV4VCG30.0V4VCG3_9ROSI; Uncharacterized protein
STRINGXP_006485375.10.0(Citrus sinensis)
STRINGXP_006436809.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126921011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-68MYB_related family protein