PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10032077m

Common Name

CICLE_v10032076mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 332aa MW: 36988.2 Da PI: 5.4257

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10032077m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4.2e-10	130	185	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + l Ciclev10032077m 130 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 185 9*****************************************99887766666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.2E-16	126	190	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.795	128	191	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-11	130	182	No hit	No description
Pfam	PF00170	6.1E-9	130	187	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-10	130	185	No hit	No description
CDD	cd14703	1.58E-24	131	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MESQDPPNPN PNPPTRGPYH RRSQSEVQYR IPDDMDLVSD PISDPLFDGP GGSEDDLFCS 60 YMDMDKIGSK PTGDDPKHEN ANVSVGARPR HRYSNSIDGT TSSSSVLESI EAKKAMDPDK 120 LAELWTVDPK RAKRILANRQ SAARSKERKA RYISELERKV QTLQTEATTL SAQLTLFQRD 180 TTDLSTENTE LKLRLQAMEQ QAQLRDALNE ALKKEVERLK VATGEMMTPT DTYNLGMQPI 240 PYNQSLFYPH HPQTGPGDTQ IIQLPEFHPF QPNMSTPHQP MLATANSHTF SEMLQQDPLG 300 RLQGLDINGR NSHLVKSEGP SISASESSST F*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435914.1	0.0	bZIP transcription factor 18
Refseq	XP_006486172.1	0.0	bZIP transcription factor 18
Swissprot	O22873	1e-118	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2H5PNM6	0.0	A0A2H5PNM6_CITUN; Uncharacterized protein
TrEMBL	V4VAB2	0.0	V4VAB2_9ROSI; Uncharacterized protein
STRING	XP_006486172.1	0.0	(Citrus sinensis)
STRING	XP_006435914.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-113	bZIP family protein

Link Out ? help Back to Top
Phytozome	Ciclev10032077m
Entrez Gene	18044427

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]