PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10032065m | ||||||||
Common Name | CICLE_v10032065mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GRF | ||||||||
Protein Properties | Length: 333aa MW: 36571.5 Da PI: 8.9034 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.5 | 6.5e-25 | 86 | 130 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Ciclev10032065m 86 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 130 79****************************************986 PP | |||||||
2 | QLQ | 63.9 | 4.1e-22 | 24 | 60 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk Ciclev10032065m 24 SPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQK 60 89*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.1E-12 | 24 | 60 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.395 | 25 | 60 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.0E-16 | 25 | 59 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 86 | 130 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.8E-21 | 87 | 129 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MNSGNGGGGA GGAGGLGMMG MRASPFTVSQ WQELEHQALI FKYMVAGLPV PPDLVLPIQK 60 SFESISHRFF HHPTMGYCSF YGKKVDPEPG RCRRTDGKKW RCSKDAYPDS KYCERHMHRG 120 RNRSRKPVES QTITQSSSTV TSLTATGSSG GTGSYQNLPL HAFANPQGTT SGTNQSHYHV 180 DSISCGIPNK EYRYLQVQGL KPEVGEHSFF TEASGSNRGL QMDSPIDSAW PLMQSRVSSH 240 PQSKSSNTSI LQNDYPQHSL FSSEFTSGEP VKQEGQSLRP FFDEWPKTRD SWSGLEDKRS 300 HQTSFSTTKL SISIPMASSD FSATSSRSPH DN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437422.1 | 0.0 | growth-regulating factor 4 | ||||
Refseq | XP_006484683.1 | 0.0 | growth-regulating factor 4-like | ||||
Refseq | XP_006484684.1 | 0.0 | growth-regulating factor 4-like | ||||
Swissprot | Q6AWY6 | 7e-92 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | V4TBP5 | 0.0 | V4TBP5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006484683.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006484684.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006437422.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14339 | 10 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-46 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10032065m |
Entrez Gene | 18045311 |