PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031944m
Common NameCICLE_v10031944mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 356aa    MW: 40016.5 Da    PI: 7.3699
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031944mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-163580147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Ciclev10031944m 35 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 80
                     899*****************************.***********996 PP
2Myb_DNA-binding56.75.5e-1887130146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Ciclev10031944m  87 RRAFTEEEEERLMHAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 130
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6093081IPR017930Myb domain
SMARTSM007173.3E-143483IPR001005SANT/Myb domain
PfamPF002495.6E-163580IPR001005SANT/Myb domain
SuperFamilySSF466893.44E-2835128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-253688IPR009057Homeodomain-like
CDDcd001672.37E-133879No hitNo description
PROSITE profilePS5129427.34282136IPR017930Myb domain
SMARTSM007172.1E-1486134IPR001005SANT/Myb domain
PfamPF002499.1E-1587129IPR001005SANT/Myb domain
CDDcd001676.31E-1289129No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2189135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MECDINLNEE FNPNENSVGP SEKDSDGGQT KTCARGHWRP AEDTKLKELV ALYGPQNWNL  60
IAEKLEGRSG KSCRLRWFNQ LDPRINRRAF TEEEEERLMH AHRLYGNKWA MIARLFPGRT  120
DNAVKNHWHV IMARKYREQS SAYRRRKLSQ SVNRIMDDMP SFVANDAAAG RIIEPQPYCS  180
SIGSVNGGFY HFTYGNFNGA AGVGLDYHLN GSPYLLLGQQ EVISSSSNQV HHSGFCAQAQ  240
QQTPCDFFSG PKSNDMMGMF SHIRSWDRPM DEVPRNISSS SASFNLHNCN NPQYLMAMQQ  300
SNSNIHNPDS FFDFTASKTQ VSPTEPSSSV TGNQVASHFD TIPSRFIDFL GVGAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-34351357107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387159.20.0transcription factor CSA-like
RefseqXP_024042187.10.0transcription factor CSA
TrEMBLV4TF530.0V4TF53_9ROSI; Uncharacterized protein
STRINGXP_006438712.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-79myb domain protein 105