PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031834m
Common NameCICLE_v10031834mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 380aa    MW: 41964.3 Da    PI: 6.8976
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031834mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.84.3e-4088164278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C v+gC++dls++++yhrrhkvCe hsk+p+vl+ g++qrfCqqCsrfh l+efDe+krsCr+rL++hn+rrrk+q+
  Ciclev10031834m  88 CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQP 164
                      **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-3280149IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.96685162IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-3787167IPR004333Transcription factor, SBP-box
PfamPF031105.0E-2988161IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDWNLKPAWD FTEFEQEAIP NVDAVDESSS RTKGNFSVDL KLGQVNSSAE DSLNKCKEPG  60
ASKMESPSPS GSFKRARAAN NGSQTASCLV DGCDSDLSNC RDYHRRHKVC ELHSKTPQVL  120
ICGQKQRFCQ QCSRFHCLEE FDEGKRSCRK RLDGHNRRRR KPQPDQLSRT GTFLSNYQGA  180
SLLPFSSSHM YPSATVVKPT WTGVVNTEAD ARCYNEHHRL NLPDERNLFF RSPSSSYKTG  240
KQFTFLQGDN PTFNSQTSSE ASVSQPLLGT ANLSDRSGAS HNVFHDRSTT QDSDCALSLL  300
SSPTTQTSGI SLSQMMPPSS MPLVRSLGTS LHNHSVEPME SVLVSSDQDD NVHCPGVFHL  360
GYDGSAASDT PQTIPFHWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-27881611184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144161KRSCRKRLDGHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.206280.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5022380.0FJ502238.1 Poncirus trifoliata squamosa promoter-binding protein (SPL13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436866.10.0squamosa promoter-binding-like protein 13A
RefseqXP_006493224.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A2H5PV620.0A0A2H5PV62_CITUN; Uncharacterized protein
TrEMBLV4TJY00.0V4TJY0_9ROSI; Uncharacterized protein
STRINGXP_006493224.10.0(Citrus sinensis)
STRINGXP_006436866.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-70SBP family protein