PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031780m
Common NameCICLE_v10031391mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 391aa    MW: 42725.4 Da    PI: 7.2492
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031780mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.63.1e-42186262278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      CqvegC  dls+ak+yhr+h+vCe hsk+p+v+v gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  Ciclev10031780m 186 CQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQP 262
                      **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-34179247IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.573183260IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-39184265IPR004333Transcription factor, SBP-box
PfamPF031104.8E-32186259IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSSMMEWNGK TPLQWDWENL IMFNATAAEN PRKTRQIEWE IDGDGGIDST SFFSSGGGDG  60
SGGSISDMGL ASLSKSSKSA SNNSSSMGET KTSKFRLEAS DDVLEDFDLK KEFAKAEPTG  120
GSPTLEASVG SGEPLLGLKL GKRMYFEDIS AGGNGKNSSF PAVCGSYSTS AKRSRSNPQT  180
TQAALCQVEG CGLDLSSAKD YHRKHRVCEN HSKSPKVIVG GLERRFCQQC SRFHGLSEFD  240
EKKRSCRRRL SDHNARRRKS QPEAVRLNPA RLSSSLYGPE ESMISFDLGA TQDCHSALSL  300
LSKTSWGICE PKKVSQQHPT STSLTNIPHA VMPAMAQGSP FASSEYRQIG KLSTEFQVHA  360
SSFHQDEGNY IQEIQLYRAP YESDFYPTVD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-281852591084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241258KKRSCRRRLSDHNARRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.229961e-148fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024956239.10.0squamosa promoter-binding-like protein 2 isoform X3
SwissprotQ9S8401e-77SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLV4STU00.0V4STU0_9ROSI; Uncharacterized protein
STRINGXP_006484112.11e-175(Citrus sinensis)
STRINGXP_006438013.11e-175(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.38e-70squamosa promoter binding protein-like 2