PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031623m
Common NameCICLE_v10031623mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 428aa    MW: 48301.6 Da    PI: 7.1094
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031623mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.5e-52141411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      l pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s
  Ciclev10031623m  14 LLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYS 106
                      579***************************.89***************8888999*************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ +glkk+Lvfykg+a kg ktdW+mhe+rl
  Ciclev10031623m 107 SeGNKCIGLKKSLVFYKGKAAKGIKTDWMMHEFRL 141
                      956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100557.08214172IPR003441NAC domain
SuperFamilySSF1019411.44E-5714172IPR003441NAC domain
PfamPF023651.7E-2516141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDERNENDKL DEILLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP  60
KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGN KCIGLKKSLV  120
FYKGKAAKGI KTDWMMHEFR LPSLIDSVPP KRFMDKTIPA NDSWAICRIF KKTNSTAQRA  180
LSQSWVSPLP ETASSTDAHV KSSYNTQFSL TSSMAQYFNC NNDIQQQPSS SSSCLTNTST  240
NSTFSPFDFV PYKPINPVII SKPHHQLPNI SSGDLTSSFM FSPFEPTIPA AKCNINDVSS  300
VLLSMSSDSM LGDFGKASDQ CIDFVGSQDQ YSGFSTTALP HYEMQAAVTD ISNGDHHLHH  360
EDVLMKNQHM MNHVDDQWES TVRPIGFPFS LPMMSLAAET WKPSSLWDCS SCPREISTSV  420
STSKFML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-5551797171NO APICAL MERISTEM PROTEIN
1ut4_B1e-5551797171NO APICAL MERISTEM PROTEIN
1ut7_A1e-5551797171NO APICAL MERISTEM PROTEIN
1ut7_B1e-5551797171NO APICAL MERISTEM PROTEIN
4dul_A1e-5551797171NAC domain-containing protein 19
4dul_B1e-5551797171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438680.10.0protein FEZ
RefseqXP_006483697.10.0protein FEZ
SwissprotQ9ZVH01e-114FEZ_ARATH; Protein FEZ
TrEMBLA0A2H5N8T80.0A0A2H5N8T8_CITUN; Uncharacterized protein
TrEMBLV4TJW60.0V4TJW6_9ROSI; Uncharacterized protein
STRINGXP_006483697.10.0(Citrus sinensis)
STRINGXP_006438680.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-109NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]