PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031353m
Common NameCICLE_v10031306mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 489aa    MW: 53328.1 Da    PI: 8.7849
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031353mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-16178227155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++ rW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Ciclev10031353m 178 SQYRGVTFYRRTSRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 227
                      78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-15178235IPR016177DNA-binding domain
PfamPF008471.8E-8178227IPR001471AP2/ERF domain
SMARTSM003801.0E-30179241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-16179234IPR001471AP2/ERF domain
CDDcd000186.59E-23179234No hitNo description
PROSITE profilePS5103216.99179235IPR001471AP2/ERF domain
CDDcd000185.99E-13270315No hitNo description
SuperFamilySSF541715.3E-6270314IPR016177DNA-binding domain
SMARTSM003805.7E-11271319IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MLDLNLDIAS CESSSICADK NKKKINYSSN NNIKITAMQM EDSGTSNSSV INNEEAADNA  60
SNNHVSFPFV FGIFKKENED DDNNNNNYQP AASAAAAAAA ILDDKAVPIT RQLFPVTGAG  120
STTSATTGQW LNLSCATAAA AADDVDDESA AGGQGLKPVQ QKPQQVRKSR RGPRSRSSQY  180
RGVTFYRRTS RWESHIWDCG KQVYLGGFDT AHSAARAYDR AAIKFRGVDA DLNFGVTDYE  240
EDMKQMKHLS KEEFVLILRR QSNGFARGSS KYRGVTLHKC GRWEARMGQL LGKKAYDKAA  300
IKQNGREAVT NFEPSAYQRE TLLDSKNGGS SNNLNLDLSI GISQPSSTIY CEACQMPNKE  360
RRVLDSTVYA SMGVQLQPHH PHHGLTMPPQ SHEEMAKEKR VQGVSSPGFT NWAWQMHNNG  420
SVAAMPVNLL SSAASSGFSS SPTTAPAANT IQVQQQINNN PAARNMFLAT QNTSAAIDNS  480
HHLRNYRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436193.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
RefseqXP_006485949.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AMA91e-90AP22_ORYSI; APETALA2-like protein 2
TrEMBLV4SNQ00.0V4SNQ0_9ROSI; Uncharacterized protein
STRINGXP_006485948.10.0(Citrus sinensis)
STRINGXP_006436192.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.24e-74related to AP2.7