PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031162m
Common NameCICLE_v10031162mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 544aa    MW: 59911.9 Da    PI: 8.1565
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031162mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.19.7e-30204263159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r +ed +++++tYeg+Hnh+
  Ciclev10031162m 204 MNDGCQWRKYGQKIAKGNPCPRAYYRCTISpTCPVRKQVQRWHEDMSILITTYEGTHNHP 263
                      58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30189265IPR003657WRKY domain
SuperFamilySSF1182908.11E-27197265IPR003657WRKY domain
PROSITE profilePS5081128.185199265IPR003657WRKY domain
SMARTSM007748.5E-34204264IPR003657WRKY domain
PfamPF031063.3E-26205263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MEGQLLVVQP IITNRLETEE KLKSVKTKVG EIREENEKLK LSLSKMAKDY QSLQSHFLDI  60
LQQEEAQKSK DKISTHHDQE NEEVDELVLL SLGRTSAQPK KDEKKICNNL SDGHEKNDKE  120
GLALGLDCSR FEFSSNSRES ENRPSPANTT CEQLKEQEPT EIWSPSKINI KSKRSDDQDE  180
EVFQKAQLKK ARVSVRARCD TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC TISPTCPVRK  240
QVQRWHEDMS ILITTYEGTH NHPLPISATA MASTTSAAAS MLQCRSSTSQ LGTSVSASTP  300
PNLHGLNFIF SENARPHDQL NFSSSSISNT NAHPTIVLDL TAPATFSHFN RLSSSAPRYN  360
SSSTSLNFSS PFSTNSLQTS WSSGYSNNYE NYLGKQPAQE HIYKPYMQTM NNPRTPPPIP  420
QVQSLTESTI AATTKIITSN PNFQSALAAA ISSYIGQQNV GGPGESSSLD MKWGKPNFSI  480
KSAADSSAQN GTLGFASSLL DKYLPSSTHQ QPAVSIFPLN SPPFSASKTA LGSPVEVKDH  540
VKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20191265174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042177.10.0probable WRKY transcription factor 36 isoform X1
TrEMBLV4SVF40.0V4SVF4_9ROSI; Uncharacterized protein
STRINGXP_006438628.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-68WRKY DNA-binding protein 72