PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030920m | ||||||||
Common Name | CICLE_v10030920mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 655aa MW: 71567.9 Da PI: 7.1358 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19 | 2.6e-06 | 253 | 273 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Ciclev10030920m 253 PCPEFRK-GACPKGDGCEYAHG 273 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.0E-15 | 17 | 161 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.65E-16 | 17 | 139 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 9.0E-10 | 58 | 130 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.751 | 62 | 140 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.017 | 62 | 92 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 2.65E-14 | 64 | 160 | No hit | No description |
SMART | SM00248 | 1.2E-4 | 97 | 129 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.835 | 97 | 132 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50103 | 13.103 | 248 | 275 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0026 | 248 | 274 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 253 | 274 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.812 | 283 | 307 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 85 | 283 | 306 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence Send to blast |
MEGGLPKLKD GALYNKSSIL LELSASDDIS AFKREIEEKG FDVDEPSFWY GRRIGSKKMG 60 FEERTPIMIA AMFGSVAVLK YVIETGKVNV NRACGSDGFT ALHCAVAGGA NSSFEVVKLL 120 LSASADVNCV DVYGNKPVDL IPVAMKSPLH SRKRAIELLL KGDHTIFEEE ELVNIPVPQL 180 SKDGTEKKEY PIDVSLPDIN NGVYGTDDFR MYAFKIKPCS RAYSHDWTEC PFVHPGENAR 240 RRDPRKYPYT CVPCPEFRKG ACPKGDGCEY AHGVFESWLH PAQYRTRLCK DEIGCARKVC 300 FFAHKPEELR PVYASTGSAM PSPSPVSASA VDMTTLSPLS LGSASMPLPA TSTPPMSPLA 360 AASSPKSGNL WQNKVNLTPP ALQLPGSRLK TTFSARDLDL LLGLENRTSN LQQQLLDEIS 420 SLSSPSSWSK EYSRIGDVNR NLDEVFESLD PSMLSQLQGM SQKQSTPTQL QSPTGLQMRQ 480 NMNQLRASYP AANLSSSPVR KPSSFGFDSS AAVAAAVMNS RSSAFTKRSQ SFIDRGAVTS 540 RAGLSMVSNP PTMRSSNLSD WSSPDGKLDW GVQGDELNKL KKSASFGFRS NNITTPTTKG 600 FTPSSSNVDE PDVSWVNSLV KDVTPEGQGL FGAEKQQYNP WMEQMYIEQE QMVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.11061 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435753.1 | 0.0 | zinc finger CCCH domain-containing protein 29 | ||||
Refseq | XP_006486308.1 | 0.0 | zinc finger CCCH domain-containing protein 29-like | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A2H5NK45 | 0.0 | A0A2H5NK45_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SMI2 | 0.0 | V4SMI2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006486308.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006435753.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM877 | 26 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030920m |
Entrez Gene | 18045107 |