PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030860m | ||||||||
Common Name | CICLE_v10030860mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 695aa MW: 76001.5 Da PI: 6.7126 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75 | 8.7e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + Ciclev10030860m 127 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RA 216 89****************************986445444..8999*********************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ Ciclev10030860m 217 ENGDLCVGIRRA 228 88999****997 PP | |||||||
2 | Auxin_resp | 120.2 | 1.6e-39 | 289 | 372 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+Prast+eFvvk++ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ Ciclev10030860m 289 AAALAANGQPFEVVYYPRASTPEFVVKASAVRAAMQIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 372 678899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-38 | 119 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-29 | 120 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.06E-22 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 4.4E-22 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.239 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.0E-34 | 289 | 372 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.717 | 608 | 688 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MITVMDSAKD AMKKNPTGES CLDSQLWHAC AGGMVQMPQI NSKVFYFPQG HLEHAKGNVE 60 LPNFNIPSMI PCRVTAIKFM ADAETDEVYA RIRLIALKSN GFDDFEDVGF DGNGGIGNES 120 SEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA EPPVQTILAK DVHGEVWKFR 180 HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFLRAENGD LCVGIRRAKK GGIGGGSDYS 240 VGWNSGGGNC GFPFGGYSGY MREDENKSSR RNSSSDLRGR VRAESVTEAA ALAANGQPFE 300 VVYYPRASTP EFVVKASAVR AAMQIQWCSG MRFKMAFETE DSSRISWFMG TISSVQVADP 360 IRWPNSPWRL LQVAWDEPDL LQNVKRVSPW LVELVSNIPA IHLSPFSPAR KKLRLPEHSD 420 FSLINQLPTP SFTRNPLVTS SPFCCISDNI PAGIQGARHA QYGLSSSDLH FNKLQSSLFP 480 LGFQQLEHTT RPARVSSANF MSETGNSKNI SCLLTMGNPT QSFKDNIEVK TPHIILFGQL 540 ILPQQNSSQS CSGDTIVNSL SDGNPEKTAI SSDGSGSAVH QNGPLENSSD EGSPWCKDHK 600 KSDLGLEMGH CKVFMESEDV GRTLDLSVLG SYEELYGKLA NMFGIESAEM FSNVLYRDAA 660 GSVKHTGDEP FSEFLKTARR LTILTDSGSD SVGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-84 | 3 | 393 | 32 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436433.1 | 0.0 | auxin response factor 16 | ||||
Refseq | XP_006485698.1 | 0.0 | auxin response factor 16 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2H5P2B1 | 0.0 | A0A2H5P2B1_CITUN; Auxin response factor | ||||
TrEMBL | V4SPI5 | 0.0 | V4SPI5_9ROSI; Auxin response factor | ||||
STRING | XP_006485698.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006436433.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030860m |
Entrez Gene | 18045713 |
Publications ? help Back to Top | |||
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