PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030787m | ||||||||
Common Name | CICLE_v10030787mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GRAS | ||||||||
Protein Properties | Length: 750aa MW: 84523.3 Da PI: 5.3473 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 396.7 | 2.4e-121 | 375 | 746 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL+ cA+av+++d ++a +lL+++++++s++gd mqR+a +f+ +L+arla+s++++y al +++ts +++l+a++lf ++P+ k+s Ciclev10030787m 375 LRTLLTLCAQAVAANDRRNACELLKQIRQHSSSTGDGMQRMAECFADGLEARLAGSGTQIYTALITKHTS---AADVLKAYHLFLAACPFRKLS 465 5789************************************************************999999...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ N++I++ +e+++r+HiiDf+i++G+QWp+L+q L+sRp+g+p+lRiTg++ p++g +e++eetg+rLak+Ae+++vpfefn+ +a+++ Ciclev10030787m 466 NFFSNKTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGfkPAERVEETGRRLAKYAETFKVPFEFNA-IAQKW 558 **********************************************************999***************************.7**** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 +++++e+L++++gE+l+Vn+ ++ +llde+v ++ +r+ vL+l+++++P+v+v+ + h+++ F +rf eal +ys+lfd+le+++pre Ciclev10030787m 559 DTIQIEDLNIDSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVLGIVNGAHSAPFFITRFREALFFYSTLFDMLETNVPREIP 652 ********************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 er+ +Ere++gre++nv+acegaer+er et+++W+ r ++aGF+++pl+e+++k ak + + + + + ++e+s++l++gWk+r ++++S W+ Ciclev10030787m 653 ERMLIEREIFGREAMNVIACEGAERIERPETYKQWQVRNMRAGFTQLPLNEEIMKMAKERVDTNYHKDFVIDEDSQWLLQGWKGRIVYALSTWK 746 *****************************************************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.96 | 349 | 726 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.3E-119 | 375 | 746 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MVMDQRLSGF YGSVNQYKLN DETFSVLSDQ NLVIGFKTND TLVSQSYLDI QALPPNPVAD 60 SPNSSSVVTQ ERDSSEDYDF SDVVLKYINE MLMEEDMEEK TCMFQESSAA LQAAEKSLYE 120 LLGEKYPPQP SYVNKNFVDH DHESPDGTHD SSNSYCNTST ISAESDNLVD HGWNSDLSEC 180 KFSNFSSQST PQSSYGSSSS NSNVVDGFID SPVSSLKIPE IFRDSESALQ FKRGFEEASK 240 FLPNGNALFV DLKNNVSVVK ELKEEPKSVL VKMGKKPENE NSPERSRGKK NPHPEEVSLE 300 RGRSNKQSAV STESTVSEEM FDMILLNCGQ SESVLREALQ NETSKNVRQN KQSRGSKGGK 360 ARGRKQGGNR DVVDLRTLLT LCAQAVAAND RRNACELLKQ IRQHSSSTGD GMQRMAECFA 420 DGLEARLAGS GTQIYTALIT KHTSAADVLK AYHLFLAACP FRKLSNFFSN KTIMNLAEKA 480 TRLHIIDFGI MYGFQWPCLI QRLSSRPGGA PKLRITGIDL PQPGFKPAER VEETGRRLAK 540 YAETFKVPFE FNAIAQKWDT IQIEDLNIDS GEVLVVNCLY RFRNLLDETV VVDCPRNIVL 600 NLIRKMNPDV FVLGIVNGAH SAPFFITRFR EALFFYSTLF DMLETNVPRE IPERMLIERE 660 IFGREAMNVI ACEGAERIER PETYKQWQVR NMRAGFTQLP LNEEIMKMAK ERVDTNYHKD 720 FVIDEDSQWL LQGWKGRIVY ALSTWKPSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-50 | 382 | 747 | 26 | 380 | Protein SCARECROW |
5b3h_A | 2e-50 | 382 | 747 | 25 | 379 | Protein SCARECROW |
5b3h_D | 2e-50 | 382 | 747 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435553.1 | 0.0 | scarecrow-like protein 30 | ||||
Refseq | XP_024042229.1 | 0.0 | scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | V4SM02 | 0.0 | V4SM02_9ROSI; Uncharacterized protein | ||||
STRING | XP_006435553.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030787m |
Entrez Gene | 18044613 |
Publications ? help Back to Top | |||
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