PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030696m | ||||||||
Common Name | CICLE_v10030696mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 847aa MW: 94479 Da PI: 6.2992 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.8 | 2.1e-23 | 151 | 252 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+e+ + ++ +++l +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + + Ciclev10030696m 151 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-RQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGE 241 99*****************************73.3334459************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ Ciclev10030696m 242 NGELRVGVRRA 252 999*****996 PP | |||||||
2 | Auxin_resp | 123.9 | 1.1e-40 | 277 | 359 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rW++SkWr+Lk Ciclev10030696m 277 AWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLK 359 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-40 | 147 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-41 | 148 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.40E-21 | 149 | 251 | No hit | No description |
Pfam | PF02362 | 2.5E-21 | 151 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.857 | 151 | 253 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-22 | 151 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.2E-38 | 277 | 359 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-11 | 702 | 805 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.08E-11 | 720 | 798 | No hit | No description |
PROSITE profile | PS51745 | 26.393 | 721 | 814 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MAAAASSSEV SMKSCNETGR IPMEGQNSNS TTSGVKRVGD PEMALYTELW HACAGPLVTV 60 PREGERVYYF PQGHIEQVEA STNQVADQQM PVYDLPSKIL CRVINVQLKA EPDTDEVFAQ 120 VTLLPESNQD ENAVEKEPPP PPPPRFHVHS FCKTLTASDT STHGGFSVLR RHADECLPPL 180 DMSRQPPTQE LAAKDLHGNE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV AGDAFIFLRG 240 ENGELRVGVR RAMRQQGNVP SSVISSHSMH LGVLATAWHA VSTGTMFTVY YKPRTSPSEF 300 IVPYDQYMES IKNNYSIGMR FKMRFEGEEA PEQRFTGTIV GIEDADPQRW RDSKWRCLKV 360 RWDETSTIPR PERVSPWKIE PALAPPALNS LPMPRPKRPR SNMLPSSPDS SVLTREGSSK 420 LNVDPSSATG FSRVLQGQEF STLRGNFAER ESNESDTAEK SVVWPPSLDD EKIDVVSASR 480 RYGSENWVPP GRHEPVYTDL LSGFGANADP SHGFSSPFAD AVPVRKSVLD QEGKFNLVAR 540 PWSLMPSGPS LKMPESNAKV PVQGGDVNYQ VRGNVRYGGF GDYPMLNGNR VEHSHGNWLM 600 PPLPPSNFEN SAHSRELMPK SAMVQDQEAG KSKDCKLFGI PLFSNHVMPE PVVSHRNTMN 660 DPAGNLDQQF RAFESDQKSD HSKSSKLADD NQVFNEHEKL SQPSQTHTKD VRSKTQCGST 720 RSCTKVQKQG IALGRSVDLS KFNNYDELIA ELDQLFEFDG ELMAPKKNWI IVYTDDEGDM 780 MLVGDDPWQE FCGMVRKIFI YTKEEVLKMN SVSFSSKGED SPMNGDGIDA KEVKQPLPLA 840 SNAENF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 44 | 381 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 0.0 | 44 | 381 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 0.0 | 44 | 381 | 18 | 354 | Auxin response factor 1 |
4ldx_A | 0.0 | 44 | 381 | 18 | 354 | Auxin response factor 1 |
4ldx_B | 0.0 | 44 | 381 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.2819 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN600520 | 0.0 | JN600520.1 Citrus sinensis auxin-response factor (ARF) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436945.1 | 0.0 | auxin response factor 2B | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | V4TF44 | 0.0 | V4TF44_9ROSI; Auxin response factor | ||||
STRING | XP_006436945.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030696m |
Entrez Gene | 18043475 |