PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030684m
Common NameCICLE_v10030684mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-X1
Protein Properties Length: 871aa    MW: 97362.5 Da    PI: 8.4202
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030684mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.91.4e-05185203120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG H C  lCH+GpCppCp+
  Ciclev10030684m 185 CG-HFCLLLCHPGPCPPCPK 203
                      **.***************96 PP
2zf-NF-X117.68.6e-06240256420
         zf-NF-X1   4 HkCqklCHeGpCppCpq 20 
                      HkC ++CHeGpCppC++
  Ciclev10030684m 240 HKCLQICHEGPCPPCKA 256
                      ***************95 PP
3zf-NF-X116.51.9e-05397416120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG+H C++ C+ G+CppC++
  Ciclev10030684m 397 CGRHACKRRCCNGDCPPCSE 416
                      ******************85 PP
4zf-NF-X117.31.1e-05418443120
         zf-NF-X1   1 CG......kHkCqklCHeGpCppCpq 20 
                      CG      +HkC ++CH+G C pCp+
  Ciclev10030684m 418 CGkrllckNHKCPSPCHRGACAPCPL 443
                      777777779***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.57369141IPR019787Zinc finger, PHD-finger
SuperFamilySSF578501.06E-671144No hitNo description
PROSITE profilePS500898.80172139IPR001841Zinc finger, RING-type
PROSITE patternPS01359072138IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.0022185203IPR000967Zinc finger, NF-X1-type
PfamPF014220.0011185202IPR000967Zinc finger, NF-X1-type
CDDcd060081.06E-7227267No hitNo description
SMARTSM004380.0037237256IPR000967Zinc finger, NF-X1-type
PfamPF014228.5E-4239255IPR000967Zinc finger, NF-X1-type
CDDcd060084.74E-8280323No hitNo description
SMARTSM004380.057290309IPR000967Zinc finger, NF-X1-type
PfamPF014220.38290308IPR000967Zinc finger, NF-X1-type
CDDcd060087.47E-7334383No hitNo description
SMARTSM0043812344364IPR000967Zinc finger, NF-X1-type
PfamPF014224.1346363IPR000967Zinc finger, NF-X1-type
CDDcd060087.48E-8387435No hitNo description
SMARTSM004380.033397416IPR000967Zinc finger, NF-X1-type
PfamPF014220.0028397415IPR000967Zinc finger, NF-X1-type
CDDcd060083.98E-11414462No hitNo description
PfamPF014220.0036418442IPR000967Zinc finger, NF-X1-type
SMARTSM004380.015424443IPR000967Zinc finger, NF-X1-type
SMARTSM0043841487502IPR000967Zinc finger, NF-X1-type
PfamPF014224.7491501IPR000967Zinc finger, NF-X1-type
SMARTSM00438180510555IPR000967Zinc finger, NF-X1-type
SMARTSM0043817592625IPR000967Zinc finger, NF-X1-type
PfamPF014220.29592602IPR000967Zinc finger, NF-X1-type
SMARTSM004380.066635653IPR000967Zinc finger, NF-X1-type
PfamPF014224637652IPR000967Zinc finger, NF-X1-type
SMARTSM0043857698720IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MTSSANYQQI LSDSDTDSDN GRTESFPDLS SSILKPYLES TNQSSLATSQ SPSELSKIKS  60
FLASSSSGAL SCLICLERIK PSDPTWHCST LCYSIFHLIC IQSWARQSSD LSASLAASRL  120
PITAEKAAES STWNCPKCRS QYSKSQIPKK YLCFCGKLED PYSEDPWILP HSCNEICNRP  180
LQNNCGHFCL LLCHPGPCPP CPKLVNSSCF CRKFQEVRRC GFKSFSCNKI CSKPLDCRTH  240
KCLQICHEGP CPPCKARAVY MCRCGRVEEE RECCERDFRC ENACGKALDC GKHVCERGCH  300
VGQCGGCPLP GKRTCPCGKR VYEGMSCDVA VPLCGATCDK MLSCRIHRCH DRCHRGPCIG  360
TCRMVIAKLC RCRSLKKEVP CYQDLVCERK CQRMRDCGRH ACKRRCCNGD CPPCSEICGK  420
RLLCKNHKCP SPCHRGACAP CPLMVTISCA CGETQFEVPC GTEKDQKPPK CRKSCHVIPL  480
CRHRSICKPH KCHYGACPPC RLLCEEEYPC GHSCKLSCHG PRPPPNPEFT LKTKKKKSNH  540
QSEVTPGSPC PPCPELIWRS CVGEHIGAER MMVCSDRTQF SCDNLCGNPL PCGNHYCTKY  600
CHALKSQSSL SVETRSAESC EVCSLPCQKE RLPTCPHSCP LPCHPGVCPS CKVLVKRSCH  660
CGSMVHVFEC IYFNTLSEKE QMAARSCGGP CHRKLPYCTH LCPEICHPGQ CPLPEQCCKK  720
VTVRCGCQTL KKEWQCLDVQ AAYRNIGRDP KDISKNQFGL GLLRCNCDCK SKVQVVDSVL  780
QSRKPKVEEK EPATEKHVGK RRKRRECVRV VNQASRLQRI FTAVKWLLLF VTLLVAVAAG  840
LYYGYKGLLK LSDWMNEVEE QRQRKRFPRI *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435741.20.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2H5NJS10.0A0A2H5NJS1_CITUN; Uncharacterized protein
TrEMBLV4TGY20.0V4TGY2_9ROSI; Uncharacterized protein
STRINGXP_006486315.10.0(Citrus sinensis)
STRINGXP_006435741.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors