PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030461m | ||||||||
Common Name | CICLE_v10030461mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 154aa MW: 17202.1 Da PI: 11.315 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 87 | 131 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + ++ G+g+W++I+r + k+Rt+ q+ s+ +ky Ciclev10030461m 87 PWTEDEHKLFLLGLQKVGKGDWRRISRNFVKTRTPTQVASHARKY 131 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.101 | 80 | 136 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.74E-16 | 82 | 137 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-16 | 83 | 134 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.4E-11 | 84 | 134 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-12 | 86 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.05E-11 | 87 | 132 | No hit | No description |
Pfam | PF00249 | 6.8E-12 | 87 | 131 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MSGTGDSSAV NGGGGVILLF GIRVVVDSMR KSVSLNNLSQ YEQPQGYSSN RNNNNKDDVA 60 AAGYASADDA VHNNSSRASR EQKRGVPWTE DEHKLFLLGL QKVGKGDWRR ISRNFVKTRT 120 PTQVASHARK YFLRRSNLNR RRRRSSLFDI TTDS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.938 | 1e-105 | abscission zone| leaf| vegetative tissue |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431332.2 | 1e-110 | transcription factor MYB1R1, partial | ||||
Swissprot | Q2V9B0 | 1e-56 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | V4SUX4 | 1e-108 | V4SUX4_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006431332.1 | 1e-109 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2461 | 26 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74840.2 | 2e-44 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030461m |
Entrez Gene | 18040130 |
Publications ? help Back to Top | |||
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