PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030232m | ||||||||
Common Name | CICLE_v10030232mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NF-YC | ||||||||
Protein Properties | Length: 206aa MW: 23028.8 Da PI: 9.1033 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 37.3 | 6e-12 | 105 | 187 | 17 | 99 |
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 k ++P+ rik+i+k++ i+ ea l+ ka + f+ ++ ++ + + ++++l +aa+v++ ++dfl d vp++ Ciclev10030232m 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDFLSDYVPEK 187 4679*************9999***********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.21E-15 | 61 | 180 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-14 | 109 | 171 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.1E-21 | 109 | 186 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MASSKKRKEE KAKLENAETR KKAKPSPKKP KKSNKKTAIQ NGTVSESKDE VVVTPASSSI 60 NDSQQDSETE QEGRSQEQEA TNEKKKKPNK NGKKIERDDD DEVSKVCNFP MGRIKRIFKT 120 QSSDIGITGE AVFLVNKATD KFLEQFCEDA YECCAKDRKK SLAYKHLAAV VSEQSKYDFL 180 SDYVPEKIKA EDALAQRELA EGREG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 32 | PKKPKKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.22407 | 1e-31 | abscission zone |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424600.1 | 1e-147 | DNA polymerase epsilon subunit C isoform X1 | ||||
Refseq | XP_024035356.1 | 1e-147 | DNA polymerase epsilon subunit C isoform X1 | ||||
TrEMBL | V4SG88 | 1e-145 | V4SG88_9ROSI; Uncharacterized protein | ||||
STRING | XP_006424600.1 | 1e-146 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 3e-30 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030232m |
Entrez Gene | 18033917 |