PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030197m | ||||||||
Common Name | CICLE_v10030197mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 119aa MW: 13483 Da PI: 10.894 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.5 | 2.1e-08 | 6 | 67 | 26 | 89 |
FAR1 26 geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +e ++++vC kegk+++++ +++r+r+ r gC ak+ v k+k gk++v +++ n +l Ciclev10030197m 6 KEKEDEEYVCLKEGKTRRSNVF--EHKRRRVIIRAGCGAKIAVVKSKLGKYVVGLFVEGQNRSL 67 4567899*********999877..9999*************************99988777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.3E-6 | 7 | 67 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MCALKKEKED EEYVCLKEGK TRRSNVFEHK RRRVIIRAGC GAKIAVVKSK LGKYVVGLFV 60 EGQNRSLSTA QKVHLLRSHQ SVSTAQKCLS QRFAAANIPT LKLVLLKYRM GAYKRWDM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 33 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015389364.1 | 1e-28 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | V4SDA9 | 5e-81 | V4SDA9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423560.1 | 8e-82 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-13 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030197m |
Entrez Gene | 18034284 |