PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030034m
Common NameCICLE_v10030034mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 232aa    MW: 26626 Da    PI: 6.6881
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030034mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-162761898
                     --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +p+kf++++g +   s   tl+ ++gr+W+v l  rk +++++l++GW +F++ + + +g f+vFk+ ++s+f   v vf+
  Ciclev10030034m  2 IPRKFVKRFGDE--LSAVATLNVPNGRVWQVGL--RKDGRKIWLQDGWDNFAEYHSIAVGYFLVFKYAKNSTF--DVLVFD 76
                     9*****999865..8999***************..********************************999998..777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-20180IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-5178IPR003340B3 DNA binding domain
CDDcd100173.64E-17176No hitNo description
Gene3DG3DSA:2.40.330.109.2E-21180IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.945178IPR003340B3 DNA binding domain
PfamPF023622.7E-14274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
RIPRKFVKRF GDELSAVATL NVPNGRVWQV GLRKDGRKIW LQDGWDNFAE YHSIAVGYFL  60
VFKYAKNSTF DVLVFDMTAC EIDYPYDYEE TESEEGDEME TENSVEILSF TKMNTPPVQQ  120
NQVKPGSKPE KKKIGGIKLE TATNSREKKR CPTHGNEHGK LKKAAYHEVE TDSSDGDQVF  180
EEMGIFMSEG HRYLSVEERQ SLVTAVRLFK PQNPSFVDIL RSKKRYSYML S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479392.11e-160B3 domain-containing transcription factor VRN1-like
RefseqXP_024035724.11e-160B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_024035725.11e-160B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_024035726.11e-160B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLV4SBZ91e-173V4SBZ9_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006423110.11e-174(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-32B3 family protein