PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030000m | ||||||||
Common Name | CICLE_v10030000mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 10181.7 Da PI: 10.5423 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.2 | 1.3e-10 | 14 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l ++ ++G +W+ ++ +++k+c++rw +yl Ciclev10030000m 14 KGAWSKEEDDKLRAYILKYGHWNWAQ----LP--KSGKSCRLRWMNYL 55 79******************778877....99..89**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.19 | 9 | 59 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-16 | 9 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-7 | 13 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.49E-18 | 15 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.48E-7 | 16 | 55 | No hit | No description |
Pfam | PF13921 | 1.3E-10 | 17 | 70 | No hit | No description |
PROSITE profile | PS50090 | 4.217 | 56 | 85 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-8 | 58 | 82 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MVRAPTYDGR GMKKGAWSKE EDDKLRAYIL KYGHWNWAQL PKSGKSCRLR WMNYLRPNIK 60 HGNYTKEEED TIIKTRQQHG NKIMK* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cauline leaves and siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted. Triggers tolerance to nickel (Ni) and zinc (Zn) ions. {ECO:0000269|PubMed:24278034}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in the root stele and in the outer layers of the lateral roots when exposed to iron (Fe)-deficient conditions (PubMed:24278034). Slightly induced by ethylene and by darkness conditions (PubMed:9839469). Accumulates upon potassium (K) depletion (PubMed:15489280). Induced by zinc (Zn) and cadmium (Cd) ions (PubMed:18088336). {ECO:0000269|PubMed:15489280, ECO:0000269|PubMed:18088336, ECO:0000269|PubMed:24278034, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006470240.1 | 5e-51 | transcription factor MYB58-like | ||||
Swissprot | Q9LTV4 | 6e-29 | MYB10_ARATH; Transcription factor MYB10 | ||||
TrEMBL | V4RQH0 | 5e-57 | V4RQH0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423463.1 | 8e-58 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12820.1 | 2e-31 | myb domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030000m |
Entrez Gene | 18034895 |
Publications ? help Back to Top | |||
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