PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10029941m | ||||||||
Common Name | CICLE_v10029941mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 160aa MW: 18508.2 Da PI: 10.368 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 39.1 | 2.5e-12 | 21 | 100 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++Y k++GFsvrk++ ++ ++ge+ +t k + + ++ ++ r++r +r gCk +l+v+ +k +gk++vtkl+ +H+H+l+ Ciclev10029941m 21 HKNYTKSIGFSVRKDELRHDGKSGETRIQT-------K-KMDGEN-RQVREPRGISRNGCKVELRVNYDKlKGKYVVTKLVVKHTHPLV 100 589****************97777443322.......2.222222.467899***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-9 | 21 | 100 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
EPIPVGVGSY FDTVNDAHVW HKNYTKSIGF SVRKDELRHD GKSGETRIQT KKMDGENRQV 60 REPRGISRNG CKVELRVNYD KLKGKYVVTK LVVKHTHPLV ELHETQFLRS QRVVNDVDLA 120 HAKALRQVRV KVCQFMNYKS DQARRHAEQN IRMPLCPNY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024039414.1 | 4e-63 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024042833.1 | 2e-63 | protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | V4SIH7 | 1e-115 | V4SIH7_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006423601.1 | 1e-116 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-12 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10029941m |
Entrez Gene | 18033645 |