PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10029805m | ||||||||
Common Name | CICLE_v10029805mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | SRS | ||||||||
Protein Properties | Length: 222aa MW: 24575.4 Da PI: 8.4693 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 157.9 | 6.6e-49 | 4 | 141 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaa.saaeaaskrkrelkskkqsalsstklssaes 96 g ++CqdCGnqakk+Ca++RCRtCCk rg++C+th+kstW+pa++r +r ++++ ++++ + + +++kr r ++ s Ciclev10029805m 4 GVTRCQDCGNQAKKNCAYMRCRTCCKRRGYECETHIKSTWIPAYRRHQRYHHQHLVPVHEQHlQLQGHSPKRLR----------------ENPS 81 6689********************************************97766655333322022222222222................3334 PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeee..laYqtavsigGhvfkGiLydqGlee 154 + l++ ++P+e+ sea frcv+vss+dd+ + laY+t++s+gGh+fkGiLy+qG e+ Ciclev10029805m 82 SPGLQIGNFPAEITSEATFRCVKVSSIDDAIDRttLAYKTSISVGGHIFKGILYYQGCES 141 44788899*********************6554349*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.3E-50 | 6 | 140 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.6E-26 | 8 | 49 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.0E-20 | 90 | 138 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
AELGVTRCQD CGNQAKKNCA YMRCRTCCKR RGYECETHIK STWIPAYRRH QRYHHQHLVP 60 VHEQHLQLQG HSPKRLRENP SSPGLQIGNF PAEITSEATF RCVKVSSIDD AIDRTTLAYK 120 TSISVGGHIF KGILYYQGCE SNSNNNVGES SSSEPPPPPQ HQQQPYYPFT VAALTTTTAA 180 TTTTTTALAA ADETPYSSSF TYPFGSYVSA GTQFFPKYPN S* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015388465.1 | 1e-166 | protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | A0A2H5PKM1 | 1e-165 | A0A2H5PKM1_CITUN; Uncharacterized protein | ||||
STRING | XP_006423407.1 | 1e-165 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9188 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-45 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10029805m |
Entrez Gene | 18035557 |