PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10029669m | ||||||||
Common Name | CICLE_v10029669mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 96aa MW: 10661.1 Da PI: 9.4192 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 9 | 53 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ E +l+ +a +++ ++ +W Ia+ +g g+t +++k ++ Ciclev10029669m 9 TWTPKENKLFEKALALYDKEtpdRWQNIAKAVGGGKTVEEVKKHY 53 7*****************99************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.785 | 5 | 61 | IPR017884 | SANT domain |
SMART | SM00717 | 2.9E-9 | 6 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.22E-13 | 8 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.41E-7 | 9 | 53 | No hit | No description |
Pfam | PF00249 | 1.2E-8 | 9 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-5 | 9 | 58 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MASGSLSSTW TPKENKLFEK ALALYDKETP DRWQNIAKAV GGGKTVEEVK KHYEILVDDL 60 NRIEAGRVPI PNYKSPGSSY NAANEERILK NLKLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-31 | 1 | 95 | 1 | 93 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423283.1 | 1e-64 | protein RADIALIS-like 3 | ||||
Refseq | XP_006469147.1 | 1e-64 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 5e-35 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A067E8G3 | 3e-63 | A0A067E8G3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PY89 | 3e-63 | A0A2H5PY89_CITUN; Uncharacterized protein | ||||
TrEMBL | V4RQ20 | 3e-63 | V4RQ20_9ROSI; Uncharacterized protein | ||||
STRING | XP_006469147.1 | 5e-64 | (Citrus sinensis) | ||||
STRING | XP_006423283.1 | 5e-64 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-37 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10029669m |
Entrez Gene | 18033592 |