PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10029372m | ||||||||
Common Name | CICLE_v10029372mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 181aa MW: 20257.2 Da PI: 10.193 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.9 | 5.8e-16 | 27 | 103 | 18 | 99 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p +f++++++++ + tlt++ s rsW+vkl + ++ +++l++GW +F ++n L + +f++F++dg+++f v++f+k Ciclev10029372m 27 IPQEFLKHISKESSDKATLTVQ-GSARSWTVKL--SETGIGVFLQDGWLKFLRDNSLGDSEFLLFTYDGNMCF--SVQIFNK 103 9*****7776554444444444.477*******..**************************************..9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.42E-18 | 13 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-20 | 13 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.1E-12 | 15 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.04E-12 | 27 | 102 | No hit | No description |
Pfam | PF02362 | 1.2E-13 | 27 | 103 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.125 | 27 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEKKWENQGH AAPCFYHVIL DGKVPQIPQE FLKHISKESS DKATLTVQGS ARSWTVKLSE 60 TGIGVFLQDG WLKFLRDNSL GDSEFLLFTY DGNMCFSVQI FNKNGCERIV AASDQVRMNQ 120 EFVGFTNGTG KGLPSQKSNK PKSMRKKKNL NCMVKSGFNV QASQTRENQD GRPKMKKPAM 180 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423085.1 | 1e-133 | B3 domain-containing protein Os01g0723500 | ||||
Refseq | XP_024035398.1 | 1e-133 | B3 domain-containing protein Os01g0723500 | ||||
TrEMBL | V4SBX5 | 1e-132 | V4SBX5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423085.1 | 1e-133 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 2e-15 | VERDANDI |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10029372m |
Entrez Gene | 18034100 |