PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029355m
Common NameCICLE_v10029284mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 187aa    MW: 20659.4 Da    PI: 6.9533
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029355mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-07433534
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                      C+ +e+  ++lfC  ++  lC++C ++ H
  Ciclev10029355m  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                     7**************************998 PP
2zf-B_box28.92.3e-095291237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                     + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  Ciclev10029355m 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGgkrtH 91
                     5799*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003361.2E-8147IPR000315B-box-type zinc finger
CDDcd000217.64E-7345No hitNo description
PfamPF006433.5E-6342IPR000315B-box-type zinc finger
PROSITE profilePS501199.035196IPR000315B-box-type zinc finger
SMARTSM003365.4E-115196IPR000315B-box-type zinc finger
PfamPF006434.2E-75291IPR000315B-box-type zinc finger
CDDcd000212.51E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MTVHVGGKRT HGRYLLLRQR VEFPGDKAGR LEELALQSLD  120
QNKITRDQTQ PFRITARENQ QNHRGSPVPM LDGNADGDGK VDNKLIDLNA RPNRGQASNN  180
QVLWVF*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423480.11e-133B-box zinc finger protein 19
RefseqXP_006487374.11e-133B-box zinc finger protein 19
RefseqXP_006487375.11e-133B-box zinc finger protein 19
RefseqXP_024035322.11e-133B-box zinc finger protein 19
SwissprotC0SVM53e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLV4UBS11e-136V4UBS1_9ROSI; Uncharacterized protein
STRINGXP_006487374.11e-132(Citrus sinensis)
STRINGXP_006423480.11e-132(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-77DBB family protein