PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10029167m | ||||||||
Common Name | CICLE_v10029167mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GeBP | ||||||||
Protein Properties | Length: 246aa MW: 27614.3 Da PI: 10.2504 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 47.6 | 4.7e-15 | 25 | 121 | 5 | 98 |
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddi........dafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 r+++++Dei lL+ + + ++++ +s+s+ + + ++ +++s+ +k+++ q+++KirrL+ K++k+ + + ++++hdq f+ Ciclev10029167m 25 RVFTDSDEIRLLKIFKKLAEQNRSSSSSSTpnstitldSSSFNRINSSLGSKFTHAQITDKIRRLRVKYHKQARS-----KSLIKTPHDQALFK 113 9**************999887777433322111112222457899*************************99998.....6789********** PP DUF573 91 lskkiWgs 98 +++ iWg+ Ciclev10029167m 114 IAQLIWGK 121 ******95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.2E-15 | 25 | 120 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSSTPRKRKQ VATSPVSSPT SPNGRVFTDS DEIRLLKIFK KLAEQNRSSS SSSTPNSTIT 60 LDSSSFNRIN SSLGSKFTHA QITDKIRRLR VKYHKQARSK SLIKTPHDQA LFKIAQLIWG 120 KKKTNRKKEA KKVQNSASAD DEDEGEEQKN EQNEEREREG AELDEYPVLA GELSKYLPMN 180 LVWREALKSL GNDKLKEMND KWMLIGIEEA KIVSKKADLV KEQTQLIMKA LGDGTANGNE 240 YAGFL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424433.1 | 1e-180 | probable transcription factor At1g11510 | ||||
TrEMBL | V4RSW9 | 1e-179 | V4RSW9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006424433.1 | 1e-180 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17149 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 5e-10 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10029167m |
Entrez Gene | 18035384 |