PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10029124m | ||||||||
Common Name | CICLE_v10029124mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28352.5 Da PI: 5.8598 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63 | 5.8e-20 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll+++v+++G ++W+ I++ ++ gR++k+c++rw + Ciclev10029124m 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIP-GRSGKSCRLRWCNQ 56 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.8 | 1.2e-18 | 65 | 107 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T++Ede++++a++++G++ W+tIar ++ gRt++ +k++w++ Ciclev10029124m 65 TFTPDEDEIIIKAHARYGNK-WATIARLLN-GRTDNAIKNHWNST 107 69******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.63 | 6 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.04E-32 | 9 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-17 | 10 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-20 | 11 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-26 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.53E-16 | 13 | 55 | No hit | No description |
SMART | SM00717 | 9.2E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.727 | 63 | 112 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.7E-16 | 65 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.33E-12 | 65 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 65 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDRDSVSERV KGPWSPEEDQ LLLKLVQRYG ARNWSVISKS IPGRSGKSCR LRWCNQLSPE 60 VEHRTFTPDE DEIIIKAHAR YGNKWATIAR LLNGRTDNAI KNHWNSTLKR KYAETTRSAL 120 AAGVDEDSED SDEREKKRSA VSVSGISCSP SGSDVSDSGL PVRVFESESR YNEVFDVSTD 180 LTLGLPVTEL KKCDSVSQQE NNSDDDKTSN TPSFGPEFLS VMQEMIRNEV RNYMEVAVRN 240 AGFKRTGINK ID* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-43 | 8 | 111 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006422932.1 | 0.0 | transcription factor MYB73 | ||||
Swissprot | O23160 | 1e-74 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | V4S6Y3 | 0.0 | V4S6Y3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006422932.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 5e-64 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10029124m |
Entrez Gene | 18034576 |
Publications ? help Back to Top | |||
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