PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029108m
Common NameCICLE_v10029019mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 256aa    MW: 28781.2 Da    PI: 8.0381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029108mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.5e-1762107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  Ciclev10029108m  62 RGKMTPQEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 107
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.693156IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.7E-104268IPR009057Homeodomain-like
SuperFamilySSF466896.68E-2242112IPR009057Homeodomain-like
PROSITE profilePS5129427.50857111IPR017930Myb domain
SMARTSM007174.4E-1761109IPR001005SANT/Myb domain
PfamPF002495.4E-1662106IPR001005SANT/Myb domain
CDDcd001672.28E-1264107No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2069108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDRAGGHTAG ELCAAVWRSA LGFYCESFRF EGGGRQYNRG LNRTGKSCRL RWVNYLHPGL  60
KRGKMTPQEE RLVLELHAKW GNRWSRIARK LPGRTDNEIK NYWRTHMRKK AQERKRAVSS  120
PSSSSSNYSS PSSTVTTVDS MPCPPPQGKA SFYDTGGNDE TRVAAALVEE YETSCYSMDE  180
IWKDIELSEE KIMKQDGNGN VNFACPSPMA SPACWGYSSW DSIWKMDEAD EESKMMINLP  240
TDDQFISSWA ATLTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-184311137105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-174311191159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-174311191159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-174311160128MYB TRANSFORMING PROTEIN
1mse_C6e-184311137105C-Myb DNA-Binding Domain
1msf_C6e-184311137105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488257.10.0transcription factor MYB59 isoform X3
SwissprotQ9LX822e-60MYB48_ARATH; Transcription factor MYB48
TrEMBLV4UF850.0V4UF85_9ROSI; Uncharacterized protein
STRINGXP_006424748.11e-175(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.46e-70myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]