PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10029032m | ||||||||
Common Name | CICLE_v10029032mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 275aa MW: 31314.9 Da PI: 6.7904 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.7 | 2.8e-46 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppG+rF Pt+eelv++yL +k+eg++ el++vi+ +++y++ePw+Lpk k+++++++w+fF++r++++++g r++r+t+sgyWkatg+ Ciclev10029032m 4 LPPGYRFFPTEEELVSFYLINKLEGNRQELHRVIPVIRLYEIEPWHLPKlcgeKCQGDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPG 97 79****************************99****************767777777888********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kkt+vfykg+ap+g+kt+W mheyr+ Ciclev10029032m 98 YVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRA 135 ************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-50 | 3 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.664 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-24 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MEELPPGYRF FPTEEELVSF YLINKLEGNR QELHRVIPVI RLYEIEPWHL PKLCGEKCQG 60 DTEQWFFFTP RQEREERGGR PSRTTASGYW KATGSPGYVY SSDNRVIGVK KTMVFYKGKA 120 PTGRKTKWKM HEYRAIEGAS NPSSAVIPKL RHEFSLCRIY VKSESFRAFD RRPLEAARRE 180 EQPHGGGATT SAPNNIMVRG NGSNTSFQDA IMCDGDVATT SAQNNIMGPR SSSPETSYSG 240 EDHSDYPETN LDNNWNIVAD PQPPLWDWEQ LNWP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-38 | 4 | 165 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-38 | 4 | 165 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-38 | 4 | 165 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-38 | 4 | 165 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-38 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-38 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-38 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-38 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-38 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-38 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-38 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-38 | 4 | 165 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-38 | 4 | 165 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-38 | 4 | 165 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.11275 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424204.1 | 0.0 | NAC domain-containing protein 90 isoform X1 | ||||
Swissprot | Q9FMR3 | 6e-91 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | V4UDR2 | 0.0 | V4UDR2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006424204.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 8e-87 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10029032m |
Entrez Gene | 18034113 |
Publications ? help Back to Top | |||
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