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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10028882m |
| Common Name | CICLE_v10028887mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 312aa MW: 34785.5 Da PI: 9.796 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10028882m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 338.3 | 1.9e-103 | 1 | 311 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalve 76
mdd +++ r k yy+ p+++l +++++m+++aerda+irern+al+ek++a+ +rd a+ +rdkalaer++al+
Ciclev10028882m 1 MDDGHHENgRYKMeYYKgthaqwnmmpqhqmkePNNALV--MNKKIMAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMA 92
88888888999988999********98766643335555..99*************************************************** PP
GAGA_bind 77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkek.kakkkkk 169
rd++l+al+++e ++++++ + +g k +++ ++ ++a + +++ ++a+pi+ ++e+k ++ k+++++++++k + +k+kk
Ciclev10028882m 93 RDSALAALQYREAAANFSS--VGGFQRGGKRMHHPAY--QSGDVPEALNSGDMHATDAKPITIIPSETKPHQAKRAKENKTVTKPSvSPRKVKK 182
**********999977655..5677899999998887..3444566677899********9987777765554444444444443314568899 PP
GAGA_bind 170 ksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqg 263
+e+ +kkv++++ ++ k+e++s+d +ln v++De+t+PvPvC+CtG+++qCYkWGnGGWqS+CCttt+S yPLP+++++r+aR++grKmS++
Ciclev10028882m 183 VGEDLNKKVASDG--KKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGS 273
9999999999999..57*********.9****************************************************************** PP
GAGA_bind 264 afkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+f+klL++LaaeG+dls p+DLk++WAkHGtn+++ti+
Ciclev10028882m 274 VFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK 311
*************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MDDGHHENGR YKMEYYKGTH AQWNMMPQHQ MKEPNNALVM NKKIMAILAE RDAAIRERNI 60
ALTEKREALE TRDQALEERD KALAERDDAL MARDSALAAL QYREAAANFS SVGGFQRGGK 120
RMHHPAYQSG DVPEALNSGD MHATDAKPIT IIPSETKPHQ AKRAKENKTV TKPSVSPRKV 180
KKVGEDLNKK VASDGKKIKS EWDSQDGLNL VNFDETTMPV PVCTCTGTPH QCYKWGNGGW 240
QSSCCTTTLS SYPLPQMPNK RHARVGGRKM SGSVFTKLLS RLAAEGHDLS VPLDLKNFWA 300
KHGTNRYITI K*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
