PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028804m
Common NameCICLE_v10028804mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 337aa    MW: 38121.4 Da    PI: 7.2068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028804mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.4e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Ciclev10028804m 14 KGPWSPEEDSKLKEYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding41.23.8e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd l+  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Ciclev10028804m  69 GEFTDEEDRLICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.788962IPR017930Myb domain
SuperFamilySSF466894.87E-2811109IPR009057Homeodomain-like
SMARTSM007174.3E-131364IPR001005SANT/Myb domain
PfamPF002496.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-251569IPR009057Homeodomain-like
CDDcd001678.45E-101662No hitNo description
PROSITE profilePS5129423.02363117IPR017930Myb domain
SMARTSM007171.3E-1267115IPR001005SANT/Myb domain
PfamPF002496.4E-1269111IPR001005SANT/Myb domain
CDDcd001676.67E-970113No hitNo description
Gene3DG3DSA:1.10.10.607.6E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTDEEDRLIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAM  120
APPLSSQKKS TAPPLIPSSH HHHQALVSLL PSQPYYTPSN KSLISNSFDS FEPISSNTPL  180
HLFDNNNLIQ IQENQLFSNN NSMQGYYPMK DNFLTFGSEQ SCSSSDGSCS QIKQEDIGFH  240
QGFNYSNGFE ENNQKFMLNY GSSDRGGHES LNQWSEKPNG YFGEIASDYS LEDVKQLISC  300
SNINGCNNEN NINFFSSTDQ ETKLQDSKVM YHYFNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424474.10.0transcription factor RAX2
RefseqXP_006488026.10.0transcription factor RAX2
TrEMBLA0A067FAN80.0A0A067FAN8_CITSI; Uncharacterized protein
TrEMBLA0A2H5QQQ70.0A0A2H5QQQ7_CITUN; Uncharacterized protein
TrEMBLV4UEI60.0V4UEI6_9ROSI; Uncharacterized protein
STRINGXP_006488026.10.0(Citrus sinensis)
STRINGXP_006424474.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-78myb domain protein 36