PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10028447m

Common Name

CICLE_v10028435mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 448aa MW: 48431.3 Da PI: 10.1758

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10028447m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.8	4.8e-13	369	412	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L + Ciclev10028447m 369 RRHRRMIKNRESAARSRARKQAYTLELEAEVAKLKELNQELERK 412 699***********************************999632 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.6E-9	365	423	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.358	367	412	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.0E-11	369	418	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.5E-12	369	414	No hit	No description
CDD	cd14707	2.80E-24	369	415	No hit	No description
SuperFamily	SSF57959	4.43E-9	369	414	No hit	No description
PROSITE pattern	PS00036	0	372	387	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MGSQMNYKNV GDTSYGDGKQ AGNFPLARQP SVYSLTFEEF QNTWGGLGKD FGSMNMDELL 60 KNIWTAEESH AMNSSAGAAG ESNAPGGNLQ RQGSLTLPRT LSQKTVDEVW RDLMKEGSGG 120 AAAGGGGGSN VPQRQQTLGE MTLEEFLVRA GVVREDAQQI GGSLNNAGFY ANNNTSLALG 180 FQQPSRNNGL IGNRIMEDGS SVPSQPPSLA LNVNGIRSSQ QPQQQPQQHQ YQLQQQQQPQ 240 LQQHPYQQQQ RQQQQAPLFP KQATVAFASP MNLVNTTQLS SPGARGQVVT VTNSSMNGNL 300 VQAGGLQGGG MGMVGLGAGG VTLATGSQVA QVSPDMIAKS TADVSSPSPV PYVFGRGRKS 360 GALEKVVERR HRRMIKNRES AARSRARKQA YTLELEAEVA KLKELNQELE RKQAEKIEME 420 KNKIIEKMKY RWGGKILCLR RTLTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MGSQMNYKNV GDTSYGDGKQ AGNFPLARQP SVYSLTFEEF QNTWGGLGKD FGSMNMDELL  60
KNIWTAEESH AMNSSAGAAG ESNAPGGNLQ RQGSLTLPRT LSQKTVDEVW RDLMKEGSGG  120
AAAGGGGGSN VPQRQQTLGE MTLEEFLVRA GVVREDAQQI GGSLNNAGFY ANNNTSLALG  180
FQQPSRNNGL IGNRIMEDGS SVPSQPPSLA LNVNGIRSSQ QPQQQPQQHQ YQLQQQQQPQ  240
LQQHPYQQQQ RQQQQAPLFP KQATVAFASP MNLVNTTQLS SPGARGQVVT VTNSSMNGNL  300
VQAGGLQGGG MGMVGLGAGG VTLATGSQVA QVSPDMIAKS TADVSSPSPV PYVFGRGRKS  360
GALEKVVERR HRRMIKNRES AARSRARKQA YTLELEAEVA KLKELNQELE RKQAEKIEME  420
KNKIIEKMKY RWGGKILCLR RTLTGPW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.1293	0.0	fruit\| vegetative tissue

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269\|PubMed:11884679}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00038	PBM	Transfer from AT4G34000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:16284313}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM171703	0.0	HM171703.1 Citrus trifoliata ABA responsive element binding factor (ABF) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006423010.1	0.0	bZIP transcription factor TRAB1 isoform X2
Swissprot	Q9M7Q3	1e-120	AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBL	A0A067F0W3	0.0	A0A067F0W3_CITSI; Uncharacterized protein
TrEMBL	V4UAG8	0.0	V4UAG8_9ROSI; Uncharacterized protein
STRING	XP_006423013.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34000.2	4e-88	abscisic acid responsive elements-binding factor 3

Link Out ? help Back to Top
Phytozome	Ciclev10028447m
Entrez Gene	18033660

Publications ? help Back to Top
Zhao Q, et al. Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling. Mol. Biol. Rep., 2018. [PMID:24078097] Bao Y, et al. The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis. New Phytol., 2014. 202(1): p. 174-87 [PMID:24350984] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Xie M, et al. AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis. Plant Physiol. Biochem., 2014. 77: p. 73-83 [PMID:24561249] Kim EY,Seo YS,Park KY,Kim SJ,Kim WT Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants. Gene, 2014. 552(1): p. 146-54 [PMID:25234727] Zhang H, et al. The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis. Plant Cell, 2015. 27(1): p. 214-27 [PMID:25616872] Baek D, et al. A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. Mol. Cells, 2016. 39(2): p. 111-8 [PMID:26674968] Bao Y, et al. Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis. PLoS ONE, 2016. 11(2): p. e0148572 [PMID:26849212] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Li X, et al. Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis. Front Plant Sci, 2016. 7: p. 1075 [PMID:27486475] Wang Z, et al. Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa. Plant Physiol. Biochem., 2016. 109: p. 199-208 [PMID:27721135] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Kerr TCC, et al. Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum). Plant Cell Environ., 2018. 41(5): p. 898-907 [PMID:28098349] Lyzenga WJ,Sullivan V,Liu H,Stone SL The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG). Front Plant Sci, 2017. 8: p. 502 [PMID:28443108] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Kim HJ, et al. Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean. Mol. Cells, 2018. 41(5): p. 413-422 [PMID:29754472]