PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028428m
Common NameCICLE_v100284281mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 451aa    MW: 49723.6 Da    PI: 8.0304
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028428mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.83.2e-10146183441
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 
                       k  rr+++NReAAr+sR+RKka++++Le+   +L + 
  Ciclev10028428m 146 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQL 183
                      6889*************************855444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-8138189No hitNo description
SMARTSM003385.2E-5143209IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.186145189IPR004827Basic-leucine zipper domain
PfamPF001702.2E-7146186IPR004827Basic-leucine zipper domain
CDDcd147083.40E-21147199No hitNo description
SuperFamilySSF579596.88E-7149190No hitNo description
PROSITE patternPS000360150165IPR004827Basic-leucine zipper domain
PfamPF141448.7E-32228303IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MASHRIGAAG GLSHDSAGGR PAATLEMFPS WPMRFQQTPR GSSKSGGESI STDSGSALNT  60
ISSGKAEASQ SQLEQPESPI SNINHIKPSA SNQQQSVEMA NDASRTGPSS SQQNQNHQSA  120
AALTDAKPSQ EKRKGPGSTS DRQLDAKTLR RLAQNREAAR KSRLRKKAYV QQLETSRIKL  180
NQLEQELQRA RSQGLFLGGC GVAAGNISSG AAIFDMEYAR WLEDDQRHIS ELRSGLNQHY  240
SDGDLRIIVD AYISHYDEIF RLKGVAAKSD VFHLITGMWT TSAERCFLWM GGFRPSELIK  300
MLISQLDPLT EQQVMGIYSL QQSTQQAEEA LSQGLEQLQQ SLIETIAGGP VDDGMQQMVV  360
ALGKLENLEG FVRQADNLRQ QTLHQLRRIL TVRQAARCFL VIGEYYGRLR ALSSLWASRP  420
RETMISEDNS CQTATDLQMV QHSQNHFSNF *
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487950.10.0transcription factor TGA9 isoform X2
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A2H5QU230.0A0A2H5QU23_CITUN; Uncharacterized protein
STRINGXP_006424250.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55242441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]