PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10027940m

Common Name

CICLE_v10027940mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRAS

Protein Properties

Length: 686aa MW: 77217.7 Da PI: 6.6895

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10027940m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	374.2	1.7e-114	314	681	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 lL+ cA+av+s+d++ a++ L++++ ++s gd +qRla+yf+ AL+arl++ + + +++++++ ++ l+a+++ + P++++s+l Ciclev10027940m 314 LLTLCAQAVASNDQRTANEQLKQIRRHSSAFGDGTQRLAHYFADALEARLLGAHTPMHTHISCRTSA----ADILKAYQMSLSAWPFIRMSYLF 403 7999**********************************************999999999999886....9****9********* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aNq+I + +e+++r+HiiDf+i +G+QWp+L+q L+sRp gpp+lRiTg++ p++g +e++eetg+rL++++e+++vpfe+nv +a+++e++ Ciclev10027940m 404 ANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGfrPAERVEETGNRLKSYCERFNVPFEYNV-IAQKWETI 496 ***************************************************9************************9.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +le+++++++E+++Vn+v+++++l+d++v +s+rd+vL+l+k+++P+v+++ ++ +n++ Fl+rf eal ++sa+fd ++a++pre+ er+ Ciclev10027940m 497 RLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLNLIKRINPDVFIHGISNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDAERM 590 ****************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 Ere++g+++ n++aceg er+er et+++W++r ++aGF+++pl+++ +k++++ + + + + v+ + +++++gWk+r ++++S+W+ Ciclev10027940m 591 LFEREIVGKDALNAIACEGIERVERPETYKQWQARNQRAGFRQLPLDQELVKKVRTKAESNYHQDFVVDVDGHWMLQGWKGRVMFALSVWK 681 **********************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.466	285	661	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.9E-112	314	681	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MDAIFEGFPG SMDGFKFPAS SCSNQNLANA FKLKHNSTNH HPPFLETNPH PPAGDNLNSD 60 GDSPDSSDFS NAVLKYISEI LMEEDLEGKT CMLQDCLALQ AAEKSFYDVL GQKYPPSPNH 120 VLPCLGQNID SPDVHYTSSS SGSSSSDHSF STSNCLLDSP ESNLLVPNLH GEIESLLKRE 180 GVNFAPKVSL SKHGEGVLLS SADDGRHHSS YGSRGRKNDQ REDSDYLEQG RRSKLSAVSL 240 AVSDVKLERF DEVLLSHCEP KKDESEPYSS YRESENGSSR KLQQNGQSKW STGGTTRGRK 300 RGDKRKEVVD LPGLLTLCAQ AVASNDQRTA NEQLKQIRRH SSAFGDGTQR LAHYFADALE 360 ARLLGAHTPM HTHISCRTSA ADILKAYQMS LSAWPFIRMS YLFANQTIRK LAEKATRLHI 420 IDFGICYGFQ WPCLIQILSS RPTGPPMLRI TGIELPQPGF RPAERVEETG NRLKSYCERF 480 NVPFEYNVIA QKWETIRLED FKIDRDEVTV VNCVHRMKNL PDDTVVDSSP RDAVLNLIKR 540 INPDVFIHGI SNGTYNAPFF LARFREALFH FSAMFDIFDA TVPREDAERM LFEREIVGKD 600 ALNAIACEGI ERVERPETYK QWQARNQRAG FRQLPLDQEL VKKVRTKAES NYHQDFVVDV 660 DGHWMLQGWK GRVMFALSVW KPYQD*

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MDAIFEGFPG SMDGFKFPAS SCSNQNLANA FKLKHNSTNH HPPFLETNPH PPAGDNLNSD  60
GDSPDSSDFS NAVLKYISEI LMEEDLEGKT CMLQDCLALQ AAEKSFYDVL GQKYPPSPNH  120
VLPCLGQNID SPDVHYTSSS SGSSSSDHSF STSNCLLDSP ESNLLVPNLH GEIESLLKRE  180
GVNFAPKVSL SKHGEGVLLS SADDGRHHSS YGSRGRKNDQ REDSDYLEQG RRSKLSAVSL  240
AVSDVKLERF DEVLLSHCEP KKDESEPYSS YRESENGSSR KLQQNGQSKW STGGTTRGRK  300
RGDKRKEVVD LPGLLTLCAQ AVASNDQRTA NEQLKQIRRH SSAFGDGTQR LAHYFADALE  360
ARLLGAHTPM HTHISCRTSA ADILKAYQMS LSAWPFIRMS YLFANQTIRK LAEKATRLHI  420
IDFGICYGFQ WPCLIQILSS RPTGPPMLRI TGIELPQPGF RPAERVEETG NRLKSYCERF  480
NVPFEYNVIA QKWETIRLED FKIDRDEVTV VNCVHRMKNL PDDTVVDSSP RDAVLNLIKR  540
INPDVFIHGI SNGTYNAPFF LARFREALFH FSAMFDIFDA TVPREDAERM LFEREIVGKD  600
ALNAIACEGI ERVERPETYK QWQARNQRAG FRQLPLDQEL VKKVRTKAES NYHQDFVVDV  660
DGHWMLQGWK GRVMFALSVW KPYQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-49	318	682	26	380	Protein SCARECROW
5b3h_A	5e-49	318	682	25	379	Protein SCARECROW
5b3h_D	5e-49	318	682	25	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006424857.1	0.0	scarecrow-like protein 30
Refseq	XP_006488349.1	0.0	scarecrow-like protein 30
TrEMBL	V4SC43	0.0	V4SC43_9ROSI; Uncharacterized protein
STRING	XP_006488349.1	0.0	(Citrus sinensis)
STRING	XP_006424857.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-178	GRAS family protein

Link Out ? help Back to Top
Phytozome	Ciclev10027940m
Entrez Gene	18034803